Phasianus colchicus (Ring-necked pheasant): 116234655
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Entry
116234655 CDS
T07365
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcoc04131
]
116234655 (VPS13A)
Membrane trafficking [BR:
pcoc04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
116234655 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Spo16_N
DUF5764
Motif
Other DBs
NCBI-GeneID:
116234655
NCBI-ProteinID:
XP_031458242
Ensembl:
ENSPCLG00000012280
LinkDB
All DBs
Position
Unknown
AA seq
3192 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEAKQLMEARQRELQRIEE
AKQKIAEQDKVKEEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDITNRNNPLSFGISLQ
NLSLQTSDKNWNPCLHDESAKLFYKLVRLDNLFAYWNVKSEMFYHYGYTESLFSLKQGVA
CRNVIPDGYDFVFRPISAEAKLLMNPRSDIDFSTPKMDLDIDIKDVAVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKIWWKYVIYGILEVNVQRKLQMWSWEHIRHHRN
QVKNYKELYRTKIISKKPNEEILKSLEEFENVLDIFNITLARQQAEVEATKSGCKIYKPG
TKQDDENSGGWFSWIWGWSREDKDEQKQEVKASSLEGLMTSEEKAKLYAAIGYSETAVDP
TLPKSYEAMKLSVNLKSMSASIRENSQTPELVKFSLNELSTVFTQRPGAQAIRFETKITS
LEVTGMSQENCTPCLLSSRTVYSDNSTSLLSIMFETNPLDEGADQRLRIESQPLEIIYDA
RTINSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLMASY
IIVPQKGFYDCTSNLLLLDLGSLKMESKSRSDISGLKVGQSSIEDIMSRAYDSFDIQLTS
IQLLYSKHDENWQEARKLKYSSQHILQPLDVNVEFGRAMVVTDARMPKFKLSGQLPLLSV
QISDQKLTNILELIDSIPKAESTPATSSPPKITEAAISPVLSAPHLSQLPVLDLHSFAES
ESEEEFYDALSSPVEDVPFFETPSGSLKRASSTRRKKLNKQESLKNMTELQLRFEVAEVL
IKLCRLTDNTETPVLQLEVVGLGTELKLRTFDMTASAFLHEICLLCPEYMDDNDKPVYLV
TTLDNVEDDLLTLEYIKADINGPELKTAYQNVLQKIKVNFSSLDVHLHTETLLNAVNYLN
NLLPKQETKVAEEPVHEKTEDKKDVLKKLTSKKSKYEDVIDLNIWADLSCLRVFIREKKH
RIAEIHIEGLDSQVIMKKTATEITAKLKNIVIVDSDEMALYNKALYITGKEVFNFKMTSY
VNATDGIAYTNMDVVDNRVYLTVGCIQVVFVNKFFSSILAFINNFQAAKEALTEATVQAA
EKAATGVKELAERSSRLALDINIKAPVVIIPQSAVSANVLVADLGLITIKNRFFIAKTKT
RYNLPPVIDSMTVKLSELKLYRSCYEQNSLQTEVELLQPLNLEVAVERNLAAAWYNEVPD
IEISGRLKPMNLILSQEDITTILRTLNENIGESSGASPPSQELKDTTSRSDIRSTSDHSA
GVTVVTSAVVELHSPVKIKTTLKLDFRFDSLTLVLYSSNSKQGTNLDQRDDLLKLAEFKL
VLMSAAVKMLSDGSMNASVKLANCTLDDERQAIHKATPRMVEMKHGFEKKVMMDISYKQG
RDGTVLDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLRQSLPLKEQAPLQPVST
MEMNIIVKNPEIVFVADLTRSDAPALVVTAQCEVFIKNTPERYSMTAAVKEIQVRACPFL
PEKRKGNVTTVLQPCDFFFEMKQSGNNPQSADLMIKSLTVKVSPIIINTVITITSALYRT
AETTEEEISQIPPGLWNMKDLKDLKLWFLEESNESEDTNPVTELVPTGQLLKMSIESVIL
TLEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLHSQLELEVHYFNEMFGVWEPLLEPLEI
EKTDLFKPWILEIKMKKKAKKALVESDAEEENYKVPEYKTVISVSSKDQLNITLSKCGLQ
MLSNLGTAFAEAASQTSDIFKKDQAPFVLINSLGLAITVLPSDSFSVLNVEFGAKIFDLK
DGDTLNMEYVRTKSESEQFTAMTTLSSKRFYIQICPHNHSTVEKIPLTKVGRCIYRVRHE
ESGVERSIVCQIDTVEGSKMITIRSPIQIRNHFSIPFTIFDEGRCLGTASPENEFNIPLS
SYRSILSLLPIANENGVDGEYDVCEGITFDEIMKNVDSLLQRKCQSVRSTNHSLIINIVT
VKDTLTSSLCSDDEWDFPYVVHLWPSVLLHNLLPYHITYSVEGNGNKYDTLQDGCSAQIH
NAVLDQTKLDLELLNYLDQNWKSEYHIKSNLPDISFTTFYCITELDKTELDIAVHVTYTT
GQMVIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDCKKPLLFSFQPKNFLQNNKVQLMVT
DSELSDQFSLDTVGSHGSVKCKSHKKDYQVGVTINNSSFNITRIVTFTPFFMISNRSKYT
LEVAEEGKEKWIPIVLQQCIPFWPENDANKLLVRVENSNLPPRKINFDKQENCLLLHLDN
KLGGITVDVNLTEHSTVITFSDYHDGAAPFLLINHTEEEIIEYGQSSLSELEGCLQPNKA
VLYTWADPAGSRKLTWKCGKRTEEITPKEDKIDVLSLDCRKVVYLVSFFEGLQRIVLITE
DKNVFKLVYESVQAELAEQEIILSLQDVGISLVNNYTRQEVSYIGITSSDVVWETKPKKK
SRWKPLSVKQTDKLEQEFKEYSELTPSENKTVELEPNVLVCLTPSGNDMKIQQPNEIPIR
RNYLPALKVEYSSSAHQKSFRIQIYRIQIQNQIPGAIFPFVFYPIKPPKSVALDSAPKPF
TDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLNALVEFFTQTDVPNVQQLELFKK
DVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGGEDSNKEERKKELIPLQS
LNLLLKSIGATLTDVQDVVFKLAFFELSYHFCTTQQLQSAVTKHYSKQAIKQMYVLILGL
DVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGLKALVGGAVGGLAGAASR
ITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSGFVSGITGIVTKPI
RGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADSSEDVVSLRPPRFF
GEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMVTKSGVLFVTKGTF
GQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKIINFKSPEDAKWILS
KLEEVRENRPKS
NT seq
9579 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgaatcgctggtggtggacgtcctgaaccgcttcctcggagactacgtggtg
aacctagacagctcccagctgaagttgggcatctggggaggagctgtagctctgaaaaat
cttgaaataaaagaaaatgcactgagtcaactcgatgtgccatttaaagttaaagcagga
catattggtcaacttaacctacagattccatggcaaaacctttatactcaacctgttgag
gcagttcttgatggagtttacttgcttattgtgcccacagccagcataaaatatgatgct
gaaaaagaggcgaagcagctcatggaagcaaggcaaagggaattgcaaaggatagaggaa
gcaaagcagaaaatagctgagcaagataaagtgaaagaagaaaaacaagacacttttgta
gaaaaactagtcactcaggtcatcaaaaatcttcaagtgaaaatttccaacatccacgtt
cgctatgaggatgatatcacaaatcgaaataaccccttgtcatttgggatttcacttcag
aacctaagtttgcagacctcagataagaattggaatccatgtttacatgatgaatctgcc
aagttgttctataagcttgtacgactggataacctttttgcttactggaatgtgaaatct
gagatgttctatcattatggctatacagaatcattgtttagcttgaaacagggagttgcc
tgccgcaatgtgattccagatggttatgattttgtattccgtccaatttctgctgaggcc
aagcttcttatgaatcctcgatctgacattgatttctcaactccaaaaatggatctagat
atagatataaaggacgtagctgttgaattcaataagccacagtacttcagtgtcatggaa
cttcttgaatctattgatatgatgactcgaaatttgccatataggaagtacaggcctgat
gttccattgcacaacaatgccaagatatggtggaaatatgttatttacggcatccttgaa
gtaaatgttcaacgtaagctccaaatgtggtcatgggaacatattcggcatcataggaat
caagtgaagaactacaaggagttgtatagaacaaagataatatcaaaaaaaccgaatgaa
gaaatcttaaaatctttggaggaatttgaaaatgttctggatatttttaacatcacactt
gcaaggcaacaagcagaagttgaggccactaaatctggatgcaaaatatacaaaccagga
acaaaacaagatgatgaaaattctggtggctggtttagttggatatggggctggtcacgt
gaagataaggatgaacaaaaacaagaagtaaaggcttcaagtcttgaaggtcttatgacg
agtgaagagaaagctaaactttatgcagcaattggatatagtgaaacagctgtggaccca
acacttccaaaatcatatgaagccatgaagttgtctgtaaatttaaaaagcatgtcagca
tcaataagagaaaacagccaaactcccgagttggtaaaattttctttaaatgaattgagt
acagtatttacgcaacgacccggtgcacaagcaataagatttgaaacaaaaataacttca
cttgaagttacaggcatgtcccaagaaaactgtacaccctgtcttctgtcttctcgaaca
gtctattcagacaatagtacctcactcttaagcataatgtttgagactaatcctttggat
gagggggcagatcagaggcttagaatagaatcacagccactggaaattatatacgatgca
agaacaataaacagcttagtggatttcttcaggcccccaaaagatgtgcatttagagcaa
ctgacatctgcaactctgatgaagcttgaagagtttcgtgaaaaaacatcaacagggttg
ttgtatgttattgagacccagaaagttcttgatctcaaaattaacctcatggcttcatac
atcattgttccacaaaagggattctatgactgtacttctaatctacttcttttggatctt
ggtagtcttaagatggaaagcaaaagtcgttctgatatatcaggacttaaggtgggacaa
agcagtattgaagacataatgtcaagagcttatgacagttttgatatccagctcaccagt
atacaactactctacagcaaacatgatgagaactggcaagaggctcgcaagctgaaatac
tcatctcaacatatcttgcagcctttggatgtcaatgtggaatttggtagagctatggtt
gtcactgatgcaagaatgcccaagttcaagttgtctggacagctgcctttactttccgtc
caaatatcagaccaaaaattgacaaatatcttggagctaattgatagcattcctaaagca
gaaagtactcctgctaccagctctcctccaaaaataactgaggctgcaatatcacctgtg
ctctccgcaccacatttatcacagcttcctgttttggatcttcattcatttgcagagtca
gaatcagaagaagaattttatgatgctctaagcagtcctgtggaagatgtgccatttttt
gaaactccgtctggatccctcaaacgagctagcagcacaagaagaaaaaaactaaataaa
caagaatctttgaaaaatatgacagaactccagctgaggtttgaagtagcagaggtctta
ataaaattatgccgtcttactgacaatactgagactccagtgctgcagcttgaggttgta
gggttaggcactgaacttaaattaagaacatttgacatgactgcaagtgctttcctgcat
gaaatttgcctactgtgtccagagtatatggatgacaatgacaaaccagtttacttagtt
actactttggataatgtagaagatgatcttctcactctggaatacataaaggctgatatt
aatggaccggaattgaagactgcctatcagaacgttctacagaaaataaaggtaaacttt
tcatctcttgatgttcatttgcataccgagactctcttgaatgctgtgaactatctgaac
aatcttctacccaaacaagaaactaaagttgcagaagagccagtccatgaaaaaacagag
gataaaaaggatgttcttaaaaaattaacatcaaaaaaatcaaagtatgaagatgttatt
gacctcaatatctgggcggatttatcctgtttgcgtgtctttattagagagaaaaaacac
agaatagctgaaattcacatcgaaggtctggatagccaagtgatcatgaaaaaaacagca
acagaaataactgcaaaactaaagaacattgttattgtggattctgatgagatggcactg
tataacaaggctctttacatcacaggaaaagaagtcttcaacttcaaaatgacatcttac
gtgaatgctacggatggtattgcatacacaaatatggatgttgttgacaatcgtgtttac
ttaactgttggttgtattcaagtagtttttgtcaacaaattcttttcttctattttggct
tttataaataattttcaagctgccaaggaagctcttactgaggcaacagttcaagcagca
gagaaagcagctacaggtgtgaaagagctagcagagcgtagttctcgtttggcactagat
atcaatattaaagcacctgttgtgataattccacagtcagcagtttctgcaaatgttctg
gtggctgatcttggtctaatcactataaagaaccgattctttattgctaaaacaaagact
cgatataatctcccacctgttattgactctatgacggtgaaattgagtgaactgaagtta
tacaggtcatgctatgagcagaattctttgcaaactgaagtagagctgctgcaacctctc
aatctggaagtagctgttgaacgaaatttagctgctgcatggtataatgaggttcctgat
attgaaatatctggacgactcaagcctatgaatctaatactcagtcaggaggacattaca
acaatactgaggacactaaatgaaaatataggtgaaagctcgggtgcatcaccaccttca
caagaactgaaagatacaaccagtcgtagtgatatccgcagtacttcagatcactctgca
ggtgtaactgttgtgacatcagctgtggtggagttgcattcacctgtgaaaataaaaaca
acactaaaactggatttcagattcgactctttgactttagtgttatatagttcaaattca
aaacagggtacaaatttggatcagagagatgatcttttgaagcttgcagaatttaaattg
gtgttgatgtcagccgctgtgaaaatgttatcagatggctcaatgaatgcttcagtcaag
ttagcaaactgtacattagatgatgaaagacaggcaatccacaaggctacaccaaggatg
gtggaaatgaagcatggatttgaaaagaaagttatgatggatataagctataagcagggg
agagatggcactgttcttgatgtgatcgttcaagagatatatctttgtgcaagcatggaa
tttctacttacagttgcagatatattcctgaaagctaatgcagaaagtgctgctgcacag
agaaatctcaggcagtccttacctttaaaagagcaagcacctctgcagcctgtatctacg
atggaaatgaacattattgttaaaaatccagaaattgtgtttgtggctgatttaacaaga
agtgatgctcctgctttggtagttacagcacagtgtgaggtcttcattaaaaatacccct
gaaaggtacagcatgacagctgctgttaaagagatacaagtgagagcatgcccatttctt
ccagaaaaaaggaaagggaatgtaactacggtattacagccttgtgacttcttctttgaa
atgaaacagtctggtaataatccacagtcagctgacctaatgattaaatctctaacagta
aaagtttcaccaataatcataaatacagtaataacaattacatccgccctttatcgaact
gcagaaacaacagaagaagagattagtcaaattcctccaggcttgtggaatatgaaagac
ttaaaagatctaaagttgtggtttcttgaagagtcaaatgaaagtgaagacacaaatcca
gtcactgaactggttcccacaggacagttattaaaaatgagtatagaatctgttattctt
acacttgaagctggggttgggcaccgaactgtaccaatgctcttagccaagtcctcattc
ctaggagaagtcaaaaactggagtaccctcatcaacctacattctcagcttgagctagag
gtgcactattttaatgagatgtttggagtttgggaacctttacttgagccactagaaata
gagaagactgacttatttaaaccatggattcttgaaatcaagatgaagaagaaagctaaa
aaagcattagttgaatcagatgcagaagaagaaaactacaaagttccagaatataaaaca
gtaataagtgtttcctcaaaagaccagctgaatattacattatccaaatgtggactgcaa
atgttgagtaacttgggaacggcatttgctgaagcagctagtcaaacttcagatatcttc
aaaaaagaccaagcgccatttgtactaataaattctttaggacttgccatcactgtcttg
cctagtgattctttcagtgtcctcaatgttgaatttggagcaaaaatatttgatttaaaa
gatggagatacattaaatatggaatatgtcagaactaaaagtgagagtgaacagttcaca
gcaatgacaaccctaagtagcaaaaggttttatattcaaatctgtccacataatcattct
actgtcgagaagattccactgaccaaagtgggtcggtgtatttacagagtaagacatgag
gagtcaggtgttgaaaggtccattgtctgccaaattgatactgttgaaggaagcaagatg
ataactattcgttctcctatccagataaggaatcatttttcaatccctttcactattttt
gatgaaggaagatgtctagggactgcatcaccagagaatgaattcaacataccattgtcc
tcatacagatcaatactgagtttgctacccatagcaaatgaaaatggagtggatggagaa
tatgatgtgtgtgaaggaattacttttgatgaaattatgaaaaatgttgacagcttattg
caaaggaaatgccagtctgtgaggtcgactaatcactcacttatcatcaatattgttact
gtaaaagacacattgacatcttcattatgttcagatgatgagtgggattttccatatgtc
gtacatttatggccttctgttcttctccacaatcttcttccttatcacataacttactct
gtagagggaaatgggaacaaatatgacactctgcaagatggatgttcagcccagattcat
aatgcagtcttggatcaaacaaaactagatttagagctgcttaattaccttgatcaaaat
tggaaaagcgagtaccatataaaaagtaacttaccagatatcagcttcacaacattttac
tgcatcacagagttggataagactgagctggacattgctgtccatgtgacatacacaact
ggacaaatggttatagcaattcacagcccatactggatggtaaacaaaactggtcgaatg
ttgcaatacaaagctgatggcattcaccgcaagcatcctccagattgcaaaaagccgctg
ctgttttctttccagcccaaaaacttcctccaaaataacaaggttcaacttatggtaacg
gacagtgagctgtctgatcagttttcactggacaccgttggaagtcatggttcagtgaaa
tgcaagagtcataaaaaagattatcaagttggcgtcactataaacaacagcagtttcaat
attactagaattgtaactttcactccattttttatgatctcaaatagaagcaaatacact
ttggaagtagctgaagaaggcaaggaaaagtggataccaattgttttacaacagtgtatt
cccttttggcctgaaaatgatgccaacaaactgcttgttagagttgaaaattcaaatctc
ccaccaaggaagataaattttgataagcaagaaaactgtcttttactgcatttagacaac
aagcttggagggattacagtggatgtcaacttgactgaacattctacagtgattaccttt
tctgattaccatgatggtgcagcaccatttctgttaataaaccatactgaagaagaaatt
attgagtatggacaaagttccctcagtgaattagaaggctgtcttcagccaaacaaggca
gtgttgtatacttgggcagacccagctggctctagaaaattgacatggaaatgtggaaaa
agaactgaggaaattacaccaaaagaagacaaaatagatgtactcagcctggactgtaga
aaggtggtctatttagtgtcattttttgaaggtctgcagcgtattgtcctaatcactgaa
gataagaatgtgtttaaattggtttatgaaagtgtacaggcagaactagcagaacaagaa
attattctgtctttacaagatgttggaatttcattggttaataattacacaaggcaggag
gtgtcatacataggaattacaagttctgacgtggtctgggagacgaaacccaagaagaag
tctagatggaaaccattgagtgttaagcaaacagataagttagaacaagaattcaaagaa
tacagtgagctaactccatcagaaaataagactgttgaattggaaccaaacgttttggtg
tgtttaactcctagtggaaatgacatgaagattcaacaacccaatgagattcctatcaga
aggaattacttgccagctttgaaagtggaatacagttcgtcagcacatcagaaatctttc
agaattcaaatttacaggatacaaattcaaaaccagattcctggagccatatttcccttt
gtgttctatcctattaaacctccaaagtccgtcgccttggattcagcaccaaaaccattt
actgatgtcagtattgttatgagaactgcaggacattcacaaatatctcatattaaatac
tttaaggtcctgattcaagagatggatctcagattagaccttggcttcctgaatgcgctg
gttgaattttttacacagactgatgtaccgaatgtccaacagctggaacttttcaaaaag
gatgtagaatctcttcaggaggaactgatgagtgtgtcatccatggatacatcacaaatc
agcttgtatgaatactttcacatctctccaattaagttacacttaagcttttcactcagt
actggtggtgaagatagtaacaaagaagaaaggaagaaagaactgataccacttcagtcc
ttgaatctccttctgaagagcataggtgccaccctcacagatgtgcaagatgttgtcttt
aagttggcattctttgaactcagctatcacttctgtactacacagcagctccaatcagca
gtgacaaagcattattcaaaacaggctattaagcagatgtatgttcttattcttggtctt
gatgtcttgggcaatccgtttggattcataagaggcttatctgaaggagtagaagcattt
ttctatgaaccttatcagggagccatccagggtcctgaagaatttatagaaggaatggca
ctaggacttaaagcactagtagggggagctgttggtggattagctggtgctgcttcaaga
atcactggtgctatggcaaaaggtgttgctgcaataacgatggatgaggattaccagcaa
aaaaggagagaagccatgaataaacagcccactggtctgagagagggtatcactcgtgga
ggaaaaggattagtttctggttttgtcagtggcataacgggaattgttacaaaaccaata
agaggagctcagaaagaaggagcagctggttttttcaaaggtgttggaaaaggattagtg
ggagcagtagctaggcctactggaggaatcatagacatggcaagcagcacatttcagggt
attaaaaaagttgcagattcatcagaagatgtggttagcctacgcccacctcgcttcttt
ggtgaagatggtgttattagaccttacagattaagagatggaactggaagtcaaatgtta
cagaaaattgaaaatggaagatttgcaaaactcagatatattgcgcatgctatggtcaac
agtacagatctgttaatggtgacaaagagtggcgtcttattcgtgacaaaagggacattt
ggacagttgacatgtgagtggcaatacacttatgatgaatttacaaaagaaccattcatt
gttgacggcaggagattacgcattgaagcaaaggaacgagtgaagtctgtgttccacgcc
aaagaatttggaaaaattattaactttaaaagtccagaggatgctaagtggatcctttct
aaattggaagaagtgagagagaatcggccaaaatcataa
DBGET
integrated database retrieval system
