Phasianus colchicus (Ring-necked pheasant): 116234934
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Entry
116234934 CDS
T07365
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc04510
Focal adhesion
pcoc04512
ECM-receptor interaction
pcoc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116234934 (COL2A1)
04518 Integrin signaling
116234934 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116234934 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcoc00536
]
116234934 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116234934 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
116234934
NCBI-ProteinID:
XP_031458642
Ensembl:
ENSPCLG00000009939
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MHGRRPPRSAALFLLLLLTAAAAAQDRDLPEAAGGCVQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEELRDCPSPEIPFGECCPVCPAEPPAAARNLFMTPPPPPPHLPVVGPRG
PPGPQVGARFSGRIGDGGGAGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAGPMG
PRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQG
APGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAG
PKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPVGERGEQGAPG
PSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPG
ADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGPNGNPGPPGPPGSAGKDGPKGVRGDAGPPGRAGDPGLQGPAGPPGEKGEPG
EDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPG
PVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVG
PTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAG
PPGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGLRQHDVEVDATLK
SLNNQIESIRSPEGSKKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMETG
ETCVYPTPSSIPKKNWWTSKTKDKKHIWFAETINGGFHFSYGDENLSPNTASIQMTFLRL
LSTEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTK
HTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgcacggccgccgcccgccccgctccgccgctctcttcctcctcctcctcctcacggcc
gccgcagccgcgcaggaccgcgacctcccggaggccgccgggggctgcgtgcaggacggg
cagagctacagcgacaaggacgtttggaagccggagccgtgcaggatctgcgtgtgcgac
acgggaaccgttctgtgcgacgagatcatctgcgaggagctgcgggattgccccagcccc
gaaatccccttcggagagtgctgccccgtctgccccgcagagccgcccgccgccgcccgt
aatttatttatgacgcccccccccccccccccccacctccctgttgtaggaccccgaggg
cctcctggaccacaggtgggagcgcgtttctccgggcgcattggtgatgggggtggagct
ggggagaagggtgctcctggcccccgtggaagggatggagaacctggcacccctgggaac
cctggaccccccggcccccccggacctcctggcccccccggacttggtggaaactttgcg
gcgcagatggcgggcggcttcgatgagaaggcgggtggagcgcagatgggtgtcatgcag
ggacccatgggccccatgggaccccgcggcccccccggccccactggtgcacctggtccc
caaggatttcaaggcaaccctggtgagcccggtgaacccggtgctgctggtccgatgggt
ccccggggacctccgggaccacctgggaaacccggtgacgacggtgagacaggcaaaccc
ggcaaatctggagaacgtggcccccccggcccccagggcgctcgtggcttccctgggact
cctggtctccccggagtgaaaggccaccgaggctaccccggtttggatggtgccaaagga
gaggctggggctcccggagccaagggtgaatctggttcaccgggtgagaacggctccccc
ggccctatgggaccccgtgggctgcctggagagcgaggacgtcccggcccctccggcgct
gcgggtgctcgtggcaatgatggtctccccggccctgctggaccccctggacccgtcggc
cctgccggagcccctggtttccccggagcccccggttcgaagggtgaagctggtcccact
ggcgcacggggtcccgagggtgcccaaggaccccgcggcgaatccggcacccccggctct
cccggccccgctggcgcacccggtaaccctgggactgacggcatccccggtgccaagggc
tcagcgggcgccccaggcattgcaggcgctccaggattccccggcccgcgcggccccccc
ggaccccaaggtgccaccggaccactgggacccaaaggacagacgggtgaacccggcatc
gcaggcttcaagggcgagcaaggaccgaagggcgagacgggccccgcaggaccccaaggt
gcccccgggccggctggcgaggaaggcaagagaggagctcgtggtgaacctggtgccgct
ggccctgtgggcccccccggagaaaggggcgctcctggcaatcgtggattccccgggcag
gacgggctggccggacccaagggtgctccaggtgaacgcggccccgctggtctcgccggt
cccaaaggtgccactggtgaccccggacgtcccggagagcctgggctgcctggagcgagg
ggtctcaccggccgccctggtgatgcgggacctcaaggcaaagtcggtccgactggtgct
cctggagaggatggccgccccggccctcccggccctcagggtgctcgtgggcagcctggt
gtgatgggtttccccggtcccaaaggtgctaatggtgagcctggaaaagctggagagaaa
ggactgcctggtgccccaggactgcggggtcttcctggaaaggatggggagacaggagct
gctggaccacccggacccgcaggtcctgtgggtgagagaggagagcaaggagcccccggt
ccttccggattccagggactgcctggaccaccaggtccccctggagagagcggcaaaccc
ggagaccagggtgttcccggagaagctggtgcccctggtcttgttggtcccagaggtgaa
cgtggattccctggtgaacgcggctctcctggtgcccaagggctgcagggtccccgtggg
ctgcctggaacacctggcactgacggaccaaagggtgcaaccggtccggctggccccaat
ggtgcccagggtcccccagggctgcagggaatgcctggtgagagaggagcagctggcatc
gctggccccaagggtgatcggggagatgttggtgagaaaggacccgagggagctccgggc
aaggacggcgcacgtggtctgacgggtcccattggtccccctggtcccgctggccccaac
ggcgagaagggtgaatccggccctcctggtccatctggtgctgccggtgcccgtggagcc
cctggcgagcgtggcgagcccggtgcccctggtcctgctggatttgctggccccccgggt
gccgacggacaacccggtgccaaaggcgagcagggagagcctgggcagaagggtgacgcc
ggcgctcctggtccacaaggtccctccggcgctcctggcccccagggtccaactggcgtc
actggtcccaaaggagctcgtggggctcagggtccccctggagccacgggattccccgga
gccgccggccgcgtgggacctcctggccctaatggtaacccaggcccacctggaccccct
ggctctgctggcaaagatggccccaagggtgttcgtggtgatgctggcccccctggccgt
gctggagaccctggcctccaaggccctgctggcccccctggcgagaagggcgaacccggc
gaggacggccccgcgggtcccgacggcccccccgggcctcaaggcttggcaggacagcgt
ggtatcgtgggtctcccaggacagcgtggtgagagaggcttccccggactgccagggcca
tcgggagaacctggaaagcaaggagctcctggctctgcaggcgaccgaggtccccctggc
cccgtgggtccccctgggctgacaggtcctgctggagaacctgggcgtgagggcaaccct
ggtgctgacggaccccctggcagggatggtgcagctggtgtgaagggtgatcgtggtgag
accggccctgtgggtgcccctggtgctcctggagcccccggtgctcctggtcccgttggt
cccactggaaaacaaggagacagaggcgagacgggtgcacaagggcccatgggtccctct
ggtcccgctggagctcgaggaatgccgggtccccaagggcctcgtggtgacaaaggtgag
acaggagaggctggagagagagggctgaagggccaccgcggcttcaccggtctgcagggt
ctgcccggaccacctggcccttctggagaccaaggtgctgccggtcccgctggtccctcc
ggtcccagaggtccccctggtcccgttggcccctctggcaaagatggctccaatggcatg
cccggccccatcggtcctcctggtccccgtggacggagtggtgaacctggccctgcgggt
cctcctggaaaccccggtcctcccggtcctcccggtcctccgggcaccggcatcgacatg
tcagcttttgctggactgggtcagacagagaagggtcccgaccccatccgctacatgagg
gcagacgaggcggcaggagggctgcggcagcacgacgtggaggtggacgccacgctcaaa
tccctcaacaatcagatcgagagcatccgcagccccgagggttccaagaagaacccagcc
aggacttgccgtgacatcaaactctgccatcccgactggaagagcggagattactggatt
gacccgaaccagggctgcaccttggatgccatcaaagttttctgcaacatggagacgggc
gagacctgcgtctacccgacccccagcagcatccccaagaagaactggtggaccagcaag
acaaaggacaagaagcacatctggtttgcagagaccatcaacggcggtttccactttagc
tacggcgatgagaacctgtcccccaacaccgccagcatccagatgaccttcctgcgcctc
ctgtccaccgagggctcccagaacgtcacctaccactgcaagaacagcatcgcctacatg
gacgaggagacgggcaacctgaagaaagccatcctcatccagggatccaacgacgtggag
atcagagctgagggcaacagcaggttcacctacagcgtcttggaggacggctgcacgaaa
cacactggcaaatggggcaagactgtcatcgagtaccggtcgcagaagacctcgcgcctg
cccattgtagatattgcacctatggacattggcggagccgagcaggagtttggcgtggat
attggcccagtctgcttcttgtaa
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integrated database retrieval system
