Phasianus colchicus (Ring-necked pheasant): 116235309
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Entry
116235309 CDS
T07365
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03008
Ribosome biogenesis in eukaryotes
pcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116235309 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
116235309 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoc03021
]
116235309 (XRN2)
03019 Messenger RNA biogenesis [BR:
pcoc03019
]
116235309 (XRN2)
03009 Ribosome biogenesis [BR:
pcoc03009
]
116235309 (XRN2)
03016 Transfer RNA biogenesis [BR:
pcoc03016
]
116235309 (XRN2)
Transcription machinery [BR:
pcoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116235309 (XRN2)
Messenger RNA biogenesis [BR:
pcoc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116235309 (XRN2)
Ribosome biogenesis [BR:
pcoc03009
]
Eukaryotic type
Pre-60S particles
RNases
116235309 (XRN2)
Transfer RNA biogenesis [BR:
pcoc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
116235309 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
116235309
NCBI-ProteinID:
XP_031459225
Ensembl:
ENSPCLG00000012265
UniProt:
A0A669QLN7
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTIILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KKKRMKRDHPSFIPGGQFSPQALGNRSSPQAISNPRQAAYEMRMHDRQNSTMSSPNTSLN
SDGSPSPARGIKRKSEDSDSEPEPEDNIRLWESGWKQRYYKNKFDVDASDEKFRRKVVQS
YVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGV
FPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAA
LEEVYPDLTPEENRRNSLGGDVLFVGKHHPLCDFIVEQYKSKNTEPVDMPPELCYGIQGK
LTLNENAVLPDKTVESPVPMLRDLTQNSAVSISFKDPQFDEDFIFKAIVLPGAKKPPPVL
KPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHAMPRERGMPGMYANAVPLGA
YGSPYTRPLMSGQQQIPKLLSNLRPQESWRGPTPLFQQAPQRTAGAAPLLAWNRMLPAQS
QYPPGQYQGLGGPMNYPQRPEDRMDRGRQAYGPGRPYLLPPPSGRYSWN
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggctttctttcgctggctcagccgcaagtatccgtccatcatcgtcaac
tgcgtggaggagaaggccaaagaatgcaatggcgtcaaggcttcagttgatacaagcaaa
ccaaaccctaatgaggtggagtttgataatctgtatttggatatgaatggtatcattcac
ccttgtacacatccagaagacaagccagcacctaaaaatgaagatgaaatgatggttgca
atttttgagtatattgacaggatcttcaacattgtaagacccaggcgacttctctacatg
gctatagatggagtggctccacgtgcaaaaatgaatcagcagcggtcaagaagattcaga
gcatcaaaggagggcatggaagctgctgaagagaagcaaaaaataagacaagaaattctg
gcaaaaggtggcattcttcctccagaagaagtgaaggaaagatttgacagcaactgtatt
accccaggaactgagtttatggacaatcttgcaaaatgtctccgctattacatcgctgac
cgtttgaacagtgacccagggtggaaaaatttgacaataatcctgtctgatgctagtgct
cctggtgaaggtgaacataaaatcatggattacattagaagacaaagagctcaaccaaac
catgacccgaacactcatcactgtctgtgtggggctgatgctgatctaataatgcttgga
ttagccacacacgaaccaaatttcaccataattagggaagagtttaagccaaataaaccc
aagccatgtgctctttgtaaccagatgggtcacgaggttaaggattgtcagggtttgccc
agagaaaaacaaggcaagcatgatcagtttgcagacagtcttcctgcctctgaacaagaa
tttattttcatccgcttatgtgttttgcgagagtatttagaaagagaactcactatggcc
agtttacctttcacttttgattttgaaagaagtgttgatgactgggtctttatgtgcttc
tttgttggaaatgactttctccctcatctgccatctctggagatcagggagggagcaatt
gatcgcttggttaacatatataaaaacgtggtgcacaaaactgggggctatctcacagaa
agtggttttgtcaacctgcagcgagtccagatgatcatgttggctgttggagaagttgaa
gacagtattttcaaaaagcgaaaagacgatgatgataactttaaaagacgacaaaaagaa
aaaaagaaaagaatgaagagggatcatccttcttttattcctggtgggcagttttcccct
caagctctgggaaatcgctccagtcctcaggcaatcagtaaccccaggcaagctgcctat
gaaatgaggatgcatgacagacagaactccacgatgtcgtctccaaataccagtctcaat
tctgatggctccccatccccagcacgaggaattaagcgaaaatctgaagacagtgacagt
gaacctgagccagaggataatatcaggttatgggaatctggttggaagcaacgctactat
aaaaacaagtttgatgttgatgcatctgatgagaaattccgtcgtaaagttgtacagtcc
tatgttgaagggctttgctgggttctcagatattattatcagggctgtgcctcctggaac
tggtattacccttttcactacgctccgtttgcttctgactttgagggtattgcagacatg
ccctcagattttgaaaagggctcgaaaccgttcaagcctctcgaacaactgatgggagta
tttccagctgcaagtggaaattttctgcctccaacctggaggaagctcatgacagatccg
gaatcgagcatcattgacttctaccctgaagactttgctattgatctgaatgggaagaag
tatgcttggcaaggtgttgcattattgccatttgttgatgagcgacgccttagggctgcc
ttggaagaagtctatcctgacctcacacctgaagaaaacagaagaaatagccttggtggg
gatgttcttttcgttggaaaacaccatccactttgtgactttattgtggaacagtacaag
tccaaaaatacagagccagtggatatgcccccagagttgtgttacggaatccagggaaag
cttacactgaatgaaaatgctgttcttccagataagacagtagagtctcctgttccaatg
ctacgtgatcttacacaaaattctgcagtcagtatctctttcaaagatccacagtttgat
gaagattttattttcaaggctattgtgttacctggtgcaaagaaacctcctccagttctg
aagccaggagattgggaaaagaccaacaatgatggcaggccttggagaccacagcttggt
tttaatcgagacagaaagccagtccacttggaccagtcagcatttagaactttaggccat
gcaatgccaagggaaagagggatgccaggaatgtatgccaatgcagtacctcttggagct
tatgggagcccatacacccggcctcttatgagtgggcagcagcagattcctaaattgctg
tcaaatcttagaccccaggagtcttggcgaggtcctacgcccttgtttcaacaagcacca
caaagaactgctggggccgccccgctgctcgcctggaaccgcatgctgccagcccaaagt
cagtacccaccgggccagtaccaggggctgggtgggcccatgaactacccacagagacct
gaggatcggatggaccgggggaggcaggcatacggccccgggaggccctacctgctgccc
ccaccctcgggaagatacagctggaattag
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