KEGG   Phasianus colchicus (Ring-necked pheasant): 116235419
Entry
116235419         CDS       T07365                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
pcoc  Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03030  DNA replication
pcoc03410  Base excision repair
pcoc03420  Nucleotide excision repair
pcoc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcoc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116235419 (RFC4)
   03410 Base excision repair
    116235419 (RFC4)
   03420 Nucleotide excision repair
    116235419 (RFC4)
   03430 Mismatch repair
    116235419 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcoc03032]
    116235419 (RFC4)
   03036 Chromosome and associated proteins [BR:pcoc03036]
    116235419 (RFC4)
   03400 DNA repair and recombination proteins [BR:pcoc03400]
    116235419 (RFC4)
DNA replication proteins [BR:pcoc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    116235419 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    116235419 (RFC4)
Chromosome and associated proteins [BR:pcoc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    116235419 (RFC4)
DNA repair and recombination proteins [BR:pcoc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     116235419 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    116235419 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_16 AAA_30 AAA_22 DUF815 AAA_11 Mg_chelatase AAA_24 AAA_14 DNA_pol3_gamma3 SLFN-g3_helicase AAA_28 RuvB_N AAA_19 AAA_5 TIP49_C ResIII AAA_7 bpMoxR AAA_29
Other DBs
NCBI-GeneID: 116235419
NCBI-ProteinID: XP_031459447
Ensembl: ENSPCLG00000010239
UniProt: A0A669Q213
LinkDB
Position
Unknown
AA seq 362 aa
MQAFLKGPSSISTKPPAAKERSAAGSSGEGKRLKPVPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAAQELFGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRADGEVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAI
TYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACWSGSFEKLETVAKNLINEGYA
VAQLISQLHDLVVESEDFSDKQKSIIVEKLAEVDKCLADGADEYLQLISLCALVMQQLTR
ST
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggcctttctcaaaggcccgtcctccatcagcaccaagcctccagccgccaaggag
aggagcgcggcggggagcagcggggaaggcaagaggctcaaacccgtcccctgggtggag
aaatatcgccccaaaaatgtggatgaagtcgccttccaggatgaagttgttgctgtgctg
aaaaagtccttggaaggagctgatcttcccaatctgctgttctatggccctcctggaact
ggaaagacctccactattttagcagctgcccaagaactctttgggcctgaattattccga
caaagagtccttgagttaaatgcctctgatgagcgtgggatacaagtgatccgtgaaaaa
gtgaaggcttttgctcagctcacagcatctggaagccgagcagatggtgaagtttgtcct
ccttttaagattgtgatcctggatgaagcagactctatgacctcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttttgccttatttgtaattac
atcagcagaataatcgaacctttaacatctcgatgctccaaattccgtttcaaacctttg
tcagacaaaatccagcaacagaggctattggatgtttctgagaaggaaaatgtgaaaatc
actagtgaggcagtatcttaccttgttaaagtgtcagatggggacttaagaaaagcaatt
acttaccttcaaagtgccactcgcttaatgggtgggaaagagatcacagagaagactgtc
actgaaattgctggggtcatcccaagagaaacaatagatggactgctgtctgcctgttgg
agtggttcatttgagaaactggaaacagtggcaaagaatcttataaatgaggggtatgct
gttgctcagctcataagccagcttcatgatcttgttgttgagagcgaagacttcagtgac
aagcagaaatcaatcattgttgagaagcttgcagaagtggacaaatgcttggcagatggt
gctgatgaatacttgcagttgataagtctgtgtgcccttgtgatgcagcagctaacgcga
agcacctaa

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