Phasianus colchicus (Ring-necked pheasant): 116236016
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Entry
116236016 CDS
T07365
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcoc04147
]
116236016 (COL18A1)
00535 Proteoglycans [BR:
pcoc00535
]
116236016 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pcoc00536
]
116236016 (COL18A1)
Exosome [BR:
pcoc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116236016 (COL18A1)
Proteoglycans [BR:
pcoc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
116236016 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116236016 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
116236016
NCBI-ProteinID:
XP_031460352
Ensembl:
ENSPCLG00000015359
LinkDB
All DBs
Position
Unknown
AA seq
1503 aa
AA seq
DB search
MRALQAPRRGRAPASAPEPLRLRSRGARFPLPMALHHLGLWLLLASCCFSSTDAQLLDWI
WGSPKTTGTPAAPSTAEISPTLSTPLSSAAAGDVATTQRHWQPSTAAPTGQENTESTDGT
EQGDGSTAGITVPTSTAWTAAPPRSSPPTRSPTETPRPLGTGNPNTTELPRQQEGTGGSP
QRPAAARPENLSSEVSLLELIGDPPPEGIVKIYGHENRPGYVFGPNANTGQVARYHLPSP
FYRDFSLLFHIQPTTPRAGVLFAITDSTQSIIYVGVKLSDLQMGKQQIIFYYTEPGSQSS
YAAATFTVPTLLNQWTNFAISVEEDEVILYLDCEEHERVRFERSPDEMELEEGAGLFVGQ
AGGADPDKYQGVIADLRLRGDPRAAEYHCEEEDDTEASGDFGSGAEDRHRPSGKDKGIPG
LLDAVPVTSPPVVDGSETRSSVGSPQQAERTRVEERLQVSTGGTGPKGEKGEKGERGLKG
DSGTSGILGPGTAKGEKGEKGELGIKGSAGFGYPGSKGQKGEPGEPGPPGPLSRHTDGMS
LEQVTGPPGPTGPPGKDGAPGRDGEPGDPGEDGKPGEMGPQGFPGTPGESGQKGEKGDPG
VGPRGPPGPPGPPGPPGPSSKQDGLTFIDMEGSGFGGDLETLRGPRGPPGPPGPPGVPGL
PGEPGRFGMNSTDLPGPPGLPGRDGTPGPPGPEGPLGPPGKDGMPGPPGPKGERGDVGEL
GLPGAPGPKGNKGEAGPVGPPGETGLAGLPGPVGPRGQPGPPGPPGPPGPGYDAGFGDME
GSGLPLATGSPGPRGPSGPQGVPGLPGIKGEVGSLGQPGPPGPKGDAGVPGVDGRPGLEG
FPGPQGPKGNRGSPGEKGERGQDGVGLPGPPGPPGPPGQVIYISSEDRPLSALPGPEGRP
GHAGFPGPVGPKGDPGSPGIQGAPGMKGEKGEPGVIISPDGTIVAANMKGQKGEPGLPGP
MGPSGPHGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPVDISGMLSLRGLPGPPGPPGPPG
PPGSVVYDSNNGFSDASRPAFPGFHQFPGQKGEKGDVGAPGPPGQFPYDLSRFSASLRGD
KGEAGPKGEKGEPGGSTLYGPSVTGPPGPQGYPGPPGPKGDSIVGPPGPPGPQGPPGIGY
EGRQGPPGPPGPPGPPSFPGPHRQAISIPGPPGPPGPPGPPGTSGTSLGLRAMPTYQAML
SAAHELPEGGLIFLTDRQELYVRLRGGFRRVLLEEHTLVPSSALDNEVYDKLPSIHYGGA
QQPVHPLRNHNPPPTARPWRGDEVVANQHRLPQPPLLQQHELLNSYYIHRWPDPAPVAAH
VHQDFQPALHLVALNTPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIV
RRADRTSVPIVNLRDEVLFSNWEALFTGSEAPLRAGARILSFDGRDVLQDSAWPQKSIWH
GSDAKGRRLPESYCEAWRTDERGTSGQASSLSSGKLLEQSASSCQHAFVVLCIENSFMTA
AKK
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcgctgcaggcgcctcgccggggccgagctcctgcctctgcccctgagcccctc
cgtttgcgaagccggggggctcgctttcccctccccatggctctgcaccacctggggctt
tggctgctgctggcttcctgctgcttctcctccactgacgcgcagctccttgactggatt
tggggcagcccgaaaaccacggggacccccgcggcgcccagcactgcagagatttctccc
accctgagcacacctctgagctcagcagcagcaggggatgtggccaccacacagcggcac
tggcagcccagcacggcagcacctacaggacaggagaacactgagagcacggatggcacc
gagcagggggacgggagcaccgcggggatcacggtgccgaccagcaccgcatggaccgcc
gctccccctcgcagttcaccacccacccgcagccccaccgagactccgcggcccctggga
acggggaaccccaatacgacggagctgccccggcagcaggaggggacagggggttccccg
cagaggccagcagccgcccgtccagagaacctgagcagtgaggtcagcctcctggagctg
attggagacccgccaccagaggggatcgtcaaaatctacggccacgagaacagacctggc
tatgtctttggacccaatgccaacacaggccaggtggcccggtaccacctgcccagcccc
ttctaccgagacttttctctcctctttcacatccagcccaccaccccgcgggccggcgtg
ctctttgccatcacagactccacgcagagcatcatctacgtgggtgttaagctctcagac
ctgcagatgggcaagcagcagatcatcttctactatactgagccaggctcacagagctcc
tatgcggctgccaccttcaccgtgcccaccttgctcaaccaatggacaaactttgctatc
agcgtggaggaggacgaagtcatcctctacctggactgtgaggagcatgagcgggtccgc
tttgagcgctctccagatgagatggaactggaagaaggtgccgggctctttgttggtcag
gctggaggggctgacccagataaataccagggtgtgattgctgacctgaggctgagaggg
gatccgcgggcggccgagtaccattgcgaggaggaggatgacaccgaggcatctggagat
ttcggcagcggggcagaggacaggcaccgtccctcggggaaggataagggcatcccaggg
ctgctggatgctgtccctgtcacctccccgcctgtggtggatggcagtgagacaaggagc
agtgtgggatccccccagcaggcagaaaggaccagagtagaggagaggctgcaggtctcc
acaggaggcacaggccccaaaggtgaaaaaggggagaaaggtgaacgtggcctgaagggg
gactcggggaccagtggcatcttgggcccaggcactgccaagggcgagaagggggagaaa
ggtgaattgggcatcaagggcagcgctggatttggctaccctggctccaagggccagaaa
ggtgagcctggagagcctggcccccctggccctctctcacggcatactgatggcatgtca
ctggagcaagtcactggcccccctggccccactggccccccagggaaggatggggcccct
ggcagggatggcgaacctggtgatcctggcgaggacggcaaacctggtgagatggggccc
caagggttcccagggacaccaggagagtctgggcagaagggagagaagggtgaccccggt
gtgggaccaaggggccccccggggccaccaggtccccctggacctccaggaccctcctcc
aagcaggacgggctgacattcatcgacatggagggctccgggttcggtggtgacctggag
accctgcggggaccacgagggccacctggtcccccaggtcccccaggcgtgcctggcttg
ccaggggagccaggaaggtttgggatgaacagcacagacctgccaggaccaccagggctg
ccaggcagagatggaacccctgggcccccgggtccagagggtcctctaggtcctcctgga
aaagatgggatgcctggaccgccagggcccaaaggagagcggggtgatgtgggcgagctt
ggtctccctggagcaccaggacccaagggcaacaagggagaagcaggaccagtaggtccc
ccaggagagactggcttggctggccttcccgggccagttggaccccgagggcagccaggg
cccccagggcccccaggtccaccagggccagggtacgacgctggatttggtgacatggag
ggctctggactgccactcgccaccggctcccctggaccacgtggccccagtggaccacag
ggtgtgccaggactaccagggatcaagggtgaggtgggcagcctcgggcagcctggccct
ccaggcccaaagggggatgctggtgtgcctggtgtggatggccgccctggcttggagggc
ttccctggaccacagggtccgaaaggcaaccgtggcagccctggtgagaagggtgaacga
ggccaagatggcgtggggctgccaggcccccctggcccaccgggtccccccggacaggtc
atctacatctcaagtgaggataggcctttgtcagctctgccgggcccagagggcagacca
ggacatgctggtttcccgggcccagtgggaccgaagggggatccaggatcaccaggcatc
caaggtgcaccagggatgaagggagagaagggagagcccggcgtcatcatcagcccagat
gggaccattgttgctgccaacatgaaaggacagaagggggagcctgggctgccaggacca
atgggtccatccggcccccatggacgagcagggatgaagggagaaattggctttccaggc
aggcctggacgtcctggcatgaatgggctgaagggcgagaagggcgacccagtggacatc
agtggtatgctgagcttgcggggtcttcctggccccccaggtccccccggccctcccggg
ccacctggcagtgtggtctatgacagtaacaatggcttcagcgatgccagccgtcccgcc
ttcccaggtttccaccagtttccaggtcagaagggagagaaaggagatgtgggtgcccct
gggcccccaggccagttcccctatgacctgagccggttcagtgccagcctgcggggtgac
aagggagaggcaggtcccaaaggagagaagggcgagccaggtggttccacactctatggc
cccagtgtcactgggccaccagggccccagggctacccaggtccaccgggtcccaaaggg
gacagcattgttgggccaccggggcctcctggaccacagggaccccctggcattggctac
gaagggcggcaaggccccccaggccctcccggcccccctgggccaccctctttcccaggt
ccccacagacaagcaatcagcatccccggcccccctggaccaccaggcccccctgggcca
ccaggcaccagtgggacatctctggggctgcgtgccatgcccacgtaccaggcgatgctg
agtgctgcacacgagctgcctgagggaggactcatcttcctgaccgaccggcaggagctc
tacgtccgccttcgtgggggcttccgcagagttctgctggaggagcacaccctggtccct
agctctgcgctggataatgaggtatacgacaagctgcccagcattcactacggaggggcc
cagcaacctgtgcaccccctgcgcaaccacaaccccccgcccactgcccggccctggcgt
ggggatgaggtggtggccaaccagcaccgcctgccccagccacctctgctgcagcagcat
gagctcctcaacagctattacatccaccgctggccggatccagcccccgtggctgcccat
gtgcatcaggacttccagcctgctctgcacctggtggccctgaacaccccactgagtggt
ggcatgcgtggcattcgtggcgctgacttccagtgcttccagcaagcccggcaggtcggg
ctggccggcaccttccgtgccttcctctcctcccgcctgcaggacctgtacagcatcgtg
cgcagggccgaccgcacctctgtgcccatcgtcaacctccgggacgaggtgcttttcagt
aattgggaagccctcttcaccggcagcgaggcgccgctgcgggctggagcccgcatcctc
tcctttgatggccgggacgtcctgcaggactcggcatggccacagaagagcatctggcac
ggttcggatgccaagggccgtcgcctgcccgagagctactgtgaggcgtggcggacggac
gagcgtggaaccagcgggcaggcttcctcactgagctcaggcaagctcctggagcagtca
gccagcagctgtcagcatgcctttgtcgtcctctgcattgagaacagcttcatgactgcc
gccaaaaaatga
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integrated database retrieval system
