Phasianus colchicus (Ring-necked pheasant): 116237641
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Entry
116237641 CDS
T07365
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
116237641 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pcoc01001
]
116237641 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pcoc04054
]
116237641 (CIITA)
Enzymes [BR:
pcoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116237641 (CIITA)
Protein kinases [BR:
pcoc01001
]
Serine/threonine kinases: Other
TAF1 family
116237641 (CIITA)
Pattern recognition receptors [BR:
pcoc04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116237641 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
NB-ARC
LRR_14
LRR_9
nSTAND3
NPHP3_N
DUF7086
nSTAND_NTPase5
AAA
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
116237641
NCBI-ProteinID:
XP_031462822
Ensembl:
ENSPCLG00000016354
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MPKKLSVNLHIQEAEARTASLPQAAERSLTFAVRVSSSQLSGGQTFSICSSAPQDDNKRQ
IMDSASVSENGYLDLLLCDIDPVHLFTFSDPKLSGNEGEFFADPEIDTCNYEQFSNMDFL
CTVENDENEDELYLSSSARDAYARIAELAEYVLKDQHEKQVEDAFAGNLILDEMSLENTE
KFTDVKKQKCHKRTFLGSAENFSDASEPKYKKIVDAPAVSTGNGCFLTMSLNSHSSDCTP
LTHQHMSFPVPTINPLGNFVIPGSSVPLIPESLPLGMRDNRENIDFVDPAQQKINYFLGN
GPSNATKYPALTSSTELMVSPSFQVNLNGLEMFKEVQVPVLFSEETSRRPRSVEAFCTSL
MDYFRDVCKSVSVEREMSLDHMYIDGTLRQSQIETKPGKNSVKSVEKDSVTYSQQGKEKA
ILERSQIFQIPGGKELETKVIVVLGKAGMGKSILAQKICQDWSNGEFPQFEFVFWFDCKQ
ISLPEKWYSLKDLLLDFFVKPQEGSKEIFEYILQNSTKVLLVFDGLEGLHGHENFPHCSA
SQPNKDLCRMKELLSGLIQKKILNGCTLLLTARTKEKVCQYVSKVDKTIEIVGFSPRQRE
LYVTKYFEGLPSCSNALNLIKEREYLYSYCYSPVMCRFVCFLCEAVLEMGDQGLPSTLTT
LFLKFVQQKIMPTQTDVTDVTLAQNQENLATLACIAWYLGEKHQSAMKSDLLPSKKVKEF
ALKNGFFLPFAFPKHSGTGEEEYGTMFSDFVIQNFLGALHLILAEGIKDKSLIKYLSFPS
KKKKPYNWLHLVPRFLAGLLFLQDDTYFCSSNKGVKKSTKKQKMLLKYIKRLQINNLCPE
RLLELLHCIYETQNNYLLQHVALRLKPDLSFLGVVLTPPDVHVLSSTLKRSRKEFSLDLQ
NSSIDTHGLKDLVGLKNVTSFRASLSDTIKLWKYLEQTKDYELLRVSTEKFVLDPFKAKT
MKDISDLSDLVEMQEIIINCVQDASGCSSYEIPAVKNLRKLEFALGPAHGLQGFLKLVEI
LAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLTSLETLNLSQNKITDVGAEKLATAL
PSLSSLTTLSLYNNSICDFGAENLAKVLPAMASLRVLDIQYNKITGVGAQQLTDSLRKCP
HIKNLVMWNPTIPYGVLEHLQQLDSRISV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaaactttctgtaaacctccatatccaagaagctgaggctaggactgcctct
cttccccaggctgcagaacgctcattgacgtttgctgtgagagtaagcagttcccagctt
tctggagggcagaccttcagcatatgctcttctgctcctcaagatgacaacaagagacaa
atcatggattcagcatctgtgtctgaaaatggctaccttgatttgttgctttgtgatatt
gatccagtgcatctatttacattctcagatcctaagttatctggaaatgaaggtgaattc
tttgcagatcctgaaattgatacctgcaactatgaacaattcagtaatatggatttcctg
tgtacagtggaaaatgatgaaaatgaggatgaattgtatctctcttccagtgccagagat
gcttatgctagaatagctgaattagcagaatatgtgctcaaggatcagcatgagaagcag
gtggaagatgcttttgcaggaaaccttattttggatgaaatgtctcttgaaaatactgag
aaattcactgatgtaaagaagcagaaatgtcacaaaagaacctttttaggctctgcagag
aatttctctgatgcttcagaacctaaatacaagaaaattgtggatgcccctgcagtatca
acagggaatggatgtttccttacaatgtctctcaacagccattcatctgactgcacccca
ctaactcaccagcacatgtcctttcctgttcccactatcaatccactgggaaattttgta
attcctggatcttcagtacctttgattccagaaagtctgccacttggcatgagagacaac
agagagaatatagactttgtggatcctgctcagcagaaaattaattattttcttggaaat
ggcccatctaatgctacaaaatatccagcactgacttcctccactgaattaatggtatcc
ccaagttttcaagttaatttaaatggcttagaaatgttcaaagaagtccaagttccagta
cttttttctgaagaaacttcaagaagaccaaggtcagtggaagctttctgtacatcactt
atggattacttccgagacgtatgcaaatctgtgtctgtggagcgtgaaatgtcccttgat
cacatgtatattgatggtacacttaggcaaagccaaattgaaaccaagcctgggaagaac
agtgtaaaatcagtggaaaaggattcggtaacttacagtcagcaagggaaggaaaaggca
atccttgaaagaagccaaatatttcaaatcccaggtggtaaagagttagagactaaagtg
attgtggtgctgggaaaggcaggaatgggcaaaagcattcttgctcagaagatctgccag
gactggtccaacggagagtttcctcagtttgaatttgtcttttggtttgactgcaaacaa
ataagcttgcctgagaagtggtacagcttgaaagatctgcttcttgatttttttgtaaaa
cctcaggagggaagcaaagagatcttcgagtatatacttcaaaattctactaaagtcctt
ctggtttttgatggtttggaagggttgcatggccatgagaattttcctcattgttcagcc
agccagcctaacaaagacttgtgccgcatgaaggagctgctctcgggactcatccaaaag
aagatactcaatggctgtactttattacttacagcaagaacaaaagaaaaggtgtgccag
tatgtgtccaaagtggataagactattgaaatagtaggattctcccctcggcagagagaa
ctgtacgtaaccaaatactttgaaggattaccctcgtgcagtaatgcactgaatttaatc
aaagagcgtgagtacctctacagttattgttacagccctgttatgtgtagatttgtttgt
tttctctgcgaggcagtacttgaaatgggagaccaaggccttccttcaactcttactaca
ctcttcctgaaatttgttcagcaaaaaataatgcctacgcaaacagatgttacagatgtt
acacttgcacaaaaccaagagaatcttgctacgctagcctgtatagcctggtatcttgga
gaaaagcaccaaagtgccatgaaaagtgaccttcttccttctaagaaagttaaagagttt
gctctgaaaaatggatttttcctgccatttgcattccccaaacattcaggtacaggagaa
gaggaatatgggaccatgttctccgattttgtcattcagaatttcttgggtgcacttcac
cttatattagcagaaggcatcaaggacaaaagtctaataaagtatctgtcttttccatcc
aaaaagaagaaaccttataactggttacatttagtgcctcgatttttggctggattgtta
ttcctccaggatgacacctacttctgctcttcaaacaagggtgtaaaaaaatcaaccaag
aagcagaaaatgctcctgaaatatattaaaagattgcaaataaacaacctctgtccagag
aggttacttgagcttttgcactgtatttatgaaacacaaaacaattatctcctgcagcac
gtggccttaaggctcaaaccagatctgtcctttctgggcgttgttcttacaccacctgat
gtccatgtactgtcctctactttaaaaaggtcaagaaaagaattttccttggatttgcag
aacagcagtattgacacgcatgggctgaaagacttggttggcctgaagaatgtgacatca
ttcagggcctccctcagtgatacaatcaagctatggaaatatttagaacagacaaaagac
tatgaactgctgagagtgtctacagaaaaatttgttcttgatccctttaaggcaaaaaca
atgaaagacatcagtgacctttctgaccttgtagaaatgcaggagataataatcaattgt
gtgcaagatgcctctggttgcagcagctatgaaattcctgccgtaaaaaacctgagaaaa
ctagaatttgctctgggtccagcacatggccttcagggattcctaaaactcgtggaaatt
cttgcagcatttccatcactgcagcatttagaccttgatgctctgagtgaaaatggcata
ggagatgaaggagcaaagagtctgtctgaagtctttccaacactgacatcactggaaaca
ttaaacttgtcacagaataagataacagatgtgggtgcagagaaactagctacagctctt
ccctccttgtcttcattaacaacactaagcttatacaacaacagcatttgtgattttgga
gcggaaaaccttgcaaaagtccttcctgcaatggcttctttaagagtgctggacattcag
tataacaaaataactggtgttggagcccaacagctgactgacagcctaagaaaatgtccc
catataaaaaatttggtgatgtggaatcctacaattccatatggagttcttgaacacctt
cagcagctggactctaggatcagtgtgtag
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integrated database retrieval system
