Phasianus colchicus (Ring-necked pheasant): 116237875
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Entry
116237875 CDS
T07365
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03013
Nucleocytoplasmic transport
pcoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116237875 (UPF2)
03015 mRNA surveillance pathway
116237875 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoc03019
]
116237875 (UPF2)
Messenger RNA biogenesis [BR:
pcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116237875 (UPF2)
mRNA cycle factors
P-body specific factors
116237875 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
116237875
NCBI-ProteinID:
XP_031463529
Ensembl:
ENSPCLG00000000020
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MPAERKKSANMDEKESLLNNKEKEFVERRPVSTREKPKDDVKVGVKRETVKIPEDKKKKL
DEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKHEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADILD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQSKDSSKDESRDSKDTKDNKEAATGSEDLELELENLDINDDPLELDCGDEA
EDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKAN
RRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINI
ETKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
HLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLY
KDLSKVTTEKVLRQMRKLPWQDTEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG
VNPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLD
VWTKDHPFPIDIDYMISDTLELLRPKIKLCGSLEEAIRQVQDLEREFLIKLGLVNDKDSK
DTITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLT
DSNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDV
AIPLHLKSQLKKGPPLGSGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWN
QQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPN
ADLIFKTGGR
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagtcagcaaatatggatgaaaaagaatctctgctaaataat
aaagaaaaagaatttgttgaaaggcgaccggtgagcaccagggagaagccaaaagatgat
gtcaaagttggggtaaagagagagactgtaaagattcctgaagataaaaagaaaaaactg
gatgaggataaaagaaaaaaagaagacaaagagaggaagaaaaaggaagaggataaagtg
aaggcagaagaagagcaaaagaagaaagaagaggaagaaaaaaagaaacatgaagaggaa
gagaaaaagaaacaagaggaggaagttaaacgtcaacaagaagaagcagctgctcagctg
aaagaaaaagaggaagcacaccagttgcatcaggaggcttgggagcgccatcaggcaagg
aaggagcttcgcagcaaaaaccagaatgcaccagacaatcgccctgaggaaaacttcttc
agcagattagactccagtctgaagaagaacacagcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccacgattttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactgaaaatatcagatgtgaactgc
gctgtgcacttgtgttctctctttcaccagcgctatgctgattttgccccttcattgctt
caggcttggaaaaagcattttgaagcaaggaaagaagagaagactcccaacattacaaag
ctaagaactgatctgcgtttcattgcagaattgactatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcaacttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggtgatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagt
gagataattagtccagagaaacaacagcccttccagaatttattgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcattcttcactccaagggtgaactgagtgaagatcgacataagcaatatgaggaa
tttgcgatgtcttatcagaaactgttggcaaattctcagtctctagctgatatcctggat
gaaaatatgcctgaccttccccaggacaaaccaacacctgaggaacatggacctggcatt
gatattttcacaccaggaaagcctggagaatatgacctggaagggggtatctgggaagat
gaggatgctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaagtgttctcaaagtaaggattccagcaaagatgaatcaaga
gattcaaaagataccaaagataataaggaagcagctactgggagtgaggatttggagttg
gagctggagaacctggatattaatgatgacccactggaactggactgtggagatgaagct
gaagatcttacaaaaaagcttcttgatgaacaagaacaagaggatgaagaagccagtact
ggatctcatttaaaacttatagttgatgcttttcttcagcagcttccaaattgtgtgaac
agagacctcatagacaaggcagccatggatttttgcatgaatatgaatacaaaagctaac
agaagaaaactagtacgagcacttttcatagttcctaggcaaaggttggatttgctacca
ttttatgcaaggctggttgccacattgcatccctgtatgtctgatgtagcagaggatctt
tgctccatgctgaaaggagatttcagatttcatgtaagaaaaaaggaccagatcaacatt
gaaacaaagaataaaactgtgaggtttattggtgagcttaccaagtttaagatgttctcc
aaaaatgatactcttcactgtttaaagatgcttctgtcggacttttctcatcaccatatt
gaaatggcatgtactcttttggaaacctgtggaagatttctctttagatcaccagaatct
cacttaagaaccagtgttcttttggaacaaatgatgagaaaaaaacaagcaatgcatctt
gatgcacgctacgttacaatggtagagaacgcctattattactgtaatccccctccagct
gaaaaaactgtgaagaagaaacgtcctcccttacaggaatacattcgtaagcttctttac
aaggatctctcaaaggtcaccacagagaaggtcctgagacagatgcgcaaactgccttgg
caggatacagaagtaaaagactatgtcatatgctgcatgatcaacatctggaatgtgaaa
tataatagcattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagat
gttggaattcatgttgtggatggagtgctggaggatattcgtctaggaatggaggttaac
cagccaaagtttaaccagcggcggatcagcagtgccaagtttttgggggagctttacaac
taccgcatggtggaatcagctgtaatatttcgaactctatattcgttcacatcatttggt
gtgaacccagatggtagtcctagtccattggatcctccagagcatcttttcagaatcaga
cttgtgtgtacaatccttgatacctgtgggcaatattttgacagaggatccagcaaacga
aaacttgattgcttccttgtatactttcagcggtatgtttggtggaagaaaagtctggat
gtctggacgaaagaccacccatttcctatagacattgactatatgattagtgatacactg
gaactcctcagaccaaagataaagctctgcggttctctggaagaagctatcagacaggtg
caagacttggaacgagaattcttaataaaactaggtcttgtgaatgacaaagattccaaa
gataccattacagaaggggagaatctggaagaggatgaagaagaagaagaaggtggagca
gaaacagaggaacaatctggaaatgaaagtgaagtcaacgagccagaagaagaggagggc
tctgacaatgaggaggaagaaggtgaagaagaggaggaagaaaacactgattatcttaca
gattctaataaagaaaatgaaacagatgaggaaaatacagaagtaatgattaaaggagga
ggacttaaacacgtcccttgtgcagaagatgaggacttcattcaggcattagataaaatg
atgttggaaaatcttcagcaacggagtggtgaatcagttaaagtgcatcagctggatgtt
gctattcctctgcatctcaaaagccaactgaagaagggtcccccacttggaagtggggaa
ggagaatcagagtctggagacaccatgccttttgtcatgttaacaagaaaaggcaacaaa
cagcaatttaagatcttaaatgtaccgatgtcttcccaacttgctgcaaaccactggaac
caacagcaagctgaacaggaggagagaatgcggatgaaaaagctcactttggatatcaat
gaacgccaagaacaagaagactaccaggaaatgttgcagtctctggcacagcgtccagct
ccagcaaatacaaatcgtgaacggcggcctcgttaccagcatccaaagggagcacctaat
gcagatctaatctttaaaactggtgggaggtag
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integrated database retrieval system
