KEGG   Phasianus colchicus (Ring-necked pheasant): 116239048
Entry
116239048         CDS       T07365                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pcoc  Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03030  DNA replication
pcoc03410  Base excision repair
pcoc03420  Nucleotide excision repair
pcoc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcoc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116239048 (LIG1)
   03410 Base excision repair
    116239048 (LIG1)
   03420 Nucleotide excision repair
    116239048 (LIG1)
   03430 Mismatch repair
    116239048 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcoc03032]
    116239048 (LIG1)
   03400 DNA repair and recombination proteins [BR:pcoc03400]
    116239048 (LIG1)
Enzymes [BR:pcoc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     116239048 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     116239048 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     116239048 (LIG1)
DNA replication proteins [BR:pcoc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    116239048 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     116239048 (LIG1)
DNA repair and recombination proteins [BR:pcoc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     116239048 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     116239048 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     116239048 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DDR
Other DBs
NCBI-GeneID: 116239048
NCBI-ProteinID: XP_031464915
LinkDB
Position
Unknown
AA seq 777 aa
MQRRITSFFAPPRAADGAVPAHVQKLQRSPPKETPQERRDPDGSADPTSSGGSSAPVPPM
SPRAPCCSPSPQQSGDRDGDSDGDRDSAPPASKRCRQSPRDQDKGLPPPHKAPAPNSHIP
VEPSQYDPSRSGYHPVQDACWGHGHSVPYLAVARTFERIEEASSRLKIIEILTNFLRSVV
ALSPSELLPCLLLCLNRPGATSEGLELGIGETLLTRALAQATGRQLAQIRSEAQDKGDLG
LVAESSRCTQRTVVPPAPLSASGVLGKLREMAAMSGNASASKKIDIIKGLFVACRHSEAR
YLVRSLSGKLRIGLAEQSVLTALAHAAALTPPGQEWPLAVVDAGQSMAPDARRTWLEEQS
RILKQTFCELPDYAAIVPVLLEHGLEQLPKHCGITPGVPLKPMLAQPARCVSELLKRFEE
AAFTCEYKYDGERTQIHVLDSGAVFIYSRNQENTTAKYPDLVERIPKMLKPGVCSCILDA
EAVAWDKVTKQLQPFQVLMTRKRKDVDAAAIKVQVCVYAFDLLYLNGEPLVREPLATRRR
LLRQSFKEVEGEFLFATSMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSH
KWLKLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGF
TEESLEKHYNFLKEHVLTQPRPYYRWDNAVAPDRWLAAVQVWEVKCGDLSISPVYRAAVG
LVDEDKGISLRFPRFLRVRGDKKPEEATSSTQVAELYKKQQQIQNQQQAEKGDEEFY
NT seq 2334 nt   +upstreamnt  +downstreamnt
atgcagcggcggatcacgtctttcttcgccccccccagggctgcagatggcgccgtccca
gcacatgttcagaagctgcagcggagcccccccaaagagaccccccaggaacgtcgggac
cccgatgggagcgcggatcccacatcctctggtggcagctctgcccctgtaccccccatg
tcccctcgtgccccctgctgttccccctccccacagcagtcgggggatagggatggagac
agtgatggggacagggacagtgccccccctgcatccaagcgctgccgtcagtcacccaga
gaccaggacaagggacttccccctccccacaaagctccagcccccaacagccatatacca
gtggagccgtcccagtatgaccccagcaggagtgggtaccacccagtgcaggatgcgtgc
tgggggcatgggcacagtgtcccctacctggcggtggctcgtacctttgagcgcatcgag
gaagcctcatcccggctgaagatcattgagatcctcaccaacttcctgcgctctgtggtg
gccctgtcaccctccgagctgcttccctgccttcttttgtgcctcaaccgtcctggagcc
acctctgaggggctggagctgggcatcggcgagaccctgctcacccgtgccctcgcccag
gccaccggccgccagctggctcagatccgcagtgaagcacaggacaaaggggatttgggg
ttggtggccgaaagcagccgctgcacccaacgcacagtggtgccaccagccccgctgagt
gccagcggtgtccttggcaagctgcgggagatggccgccatgtcaggcaatgcatctgct
agcaagaagattgacatcatcaaggggctgtttgttgcctgccggcactcggaggcacga
tatctcgtccgatcgctcagtgggaagctacgcattgggctggccgagcagtcagtgctc
actgcgctggcacatgccgctgctctcaccccaccagggcaagagtggccgctggctgtg
gtggatgctggacagagcatggcacctgatgcacgcagaacttggttggaggagcagagc
cgcatcctcaagcagactttctgcgagctgccagactatgctgccattgtcccagtgctg
ctggagcatggcctggagcagctccccaagcactgtggcatcactccaggcgttcccttg
aagcccatgctggctcaacctgcccgctgcgtcagtgagctgctgaagcgctttgaggag
gctgcattcacctgcgagtacaaatatgatggagaacgaacccagatccatgtcctggat
agcggggctgtcttcatctacagccgcaaccaggagaacacaacagccaagtaccctgac
ctcgttgagcgcatccccaagatgctgaagcctggcgtgtgctcgtgcatcctggatgca
gaagcggtggcttgggacaaggtcactaagcagctgcagcccttccaggtgctgatgaca
aggaagagaaaggatgtggatgctgctgccattaaggtgcaagtgtgcgtctatgccttt
gatctgctatacctcaatggggagccactggtgcgggagcccttggccacgcggcgtcgg
ttgttgcgacagtcattcaaggaagtggagggcgaattcctctttgccacctcgatggac
acccgcagtgctgatgaggtctctgatttcctggacaaagccatcaaggcctcttgtgag
ggcctcatggtgaagacactggaggtggaggccacctatgagattgctaagcggtcacac
aagtggctgaagctgaagaaggactacctcgatggccttggggacacgctggatctcgtt
gtcataggtgcctacctgggcaagggcaagcgtgcaggcatctatgggggcttcctccta
gcctgctatgacgaggaaagtgaggagtaccaaagcatctgcaagataggtactggtttc
actgaggagagtttggagaaacactacaacttcctcaaggaacacgtgttgactcaacca
cgtccctattaccgctgggacaatgcagtggcccctgaccgttggctggcagccgtgcag
gtctgggaggtgaaatgtggggacctgtctatttcccctgtctacagggcagctgtgggg
ctggtggatgaggacaagggcatctcgctgcgcttcccgcggttcctgcgtgtgcgcggg
gacaagaaacccgaagaggccaccagcagcacacaggtggccgagctctacaagaagcag
cagcagatccagaaccagcagcaggcagagaaaggggacgaggagttctattga

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