Phasianus colchicus (Ring-necked pheasant): 116239411
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Entry
116239411 CDS
T07365
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116239411 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoc03019
]
116239411 (MTREX)
03041 Spliceosome [BR:
pcoc03041
]
116239411 (MTREX)
03009 Ribosome biogenesis [BR:
pcoc03009
]
116239411 (MTREX)
03016 Transfer RNA biogenesis [BR:
pcoc03016
]
116239411 (MTREX)
Enzymes [BR:
pcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116239411 (MTREX)
Messenger RNA biogenesis [BR:
pcoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116239411 (MTREX)
Spliceosome [BR:
pcoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116239411 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
116239411 (MTREX)
Ribosome biogenesis [BR:
pcoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
116239411 (MTREX)
Transfer RNA biogenesis [BR:
pcoc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116239411 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
116239411
NCBI-ProteinID:
XP_031465357
Ensembl:
ENSPCLG00000013590
UniProt:
A0A669QEF5
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MADAFGDELFSVFEGDAAAARSKAGAAEAARGPGKRQENIPSGAGLGKTRRDAEVDSTEG
AISGKKPKLEDVTSEDNNLADLMPHVKVQAVETVEGCTHEVALPADEEFTGLKPRTGKPA
KEYPFSLDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRP
TPLQHYIFPAGGDGLRLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSN
VFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSD
EDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPA
RTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGRQLLK
GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQYN
KIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGWGV
VVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPVLV
HLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIKDQGLKKV
IQKVEAFEHRMYSHPLHNDPNLETIYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKC
RKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFV
FQENSNEMPKLTEQLAGPLRQMQECAKRIARVSAEAKLETDEENYLNSFRPNLMDVVYTW
ANGASFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggatgagcttttcagcgtgtttgagggtgacgcggccgccgcc
aggagcaaagcgggtgccgctgaggccgccaggggaccgggaaagcggcaggagaacata
ccgtcgggagctgggctggggaaaaccagaagggacgctgaggtcgacagtacagaaggt
gcgatttcgggaaagaagccgaaactggaagatgtcacgtcagaagataataatctggca
gacctgatgccacatgtgaaggttcaagctgtggaaactgttgaaggctgcacacacgag
gttgcacttccagcagatgaagagttcacaggtttgaagccaagaactggaaaacctgca
aaagaatacccatttagtcttgatgcctttcagagagaagctattctgtgtgtagataat
aaccagtcggtattggtgtcagctcatacctcagctggtaaaacagtgtgtgcagagtat
gcaattgccttggccttgagggaaaaacagcgtgtgatatttacaagtccaattaaagct
ttaagtaatcaaaagtaccgtgagatgtatgaagagttccaggatgttggtttgatgact
ggagatgtcaccattaatcctacagcttcttgtctggtgatgacaacagagatcttgaga
agtatgctctacaggggttctgaggttatgcgagaagttgcatgggttatttttgatgaa
atccattacatgagagattcagaacgtggtgtagtttgggaagagacgattattttgctc
cctgacaatgttcattatgtgttcctttctgcaactattccgaatgctcgtcagtttgct
gaatggatttgccatcttcacaaacagccttgccatgtgatatatacagactatcgacct
actccactgcagcattacatattcccagcaggaggagatggactgcgtcttgttgttgat
gaaaatggagatttcagagaagataatttcaatacagcaatgcaagtgcttagagatgca
ggagacttagcaaaaggagaccagaagggcaggaaaggaggaacaaaaggcccttccaac
gtatttaagattgtgaagatgatcatggagaggaatttccagcctgtaatcattttcagc
ttcagtaagaaggattgtgaagcctacgctcttcagatgacaaagttagattttaataca
gatgaagaaaaaaagatggttgaagaagtgttcaataatgcaattgactgtctgtcagat
gaagacaaaaaacttcctcaggttgagcatgtgctgcctcttctgaaacggggaataggc
atccatcatggtggtctgcttcctatcttaaaagaaaccatagaaattcttttctcagag
ggcctaataaaggccttatttgcaacagaaacgtttgctatgggaattaatatgccagcc
aggactgtgctgtttacaagtgcctccaaatttgatgggaaagatttccgatggatctcc
tcaggtgaatacattcaaatgtcaggtcgtgcaggtcgccgaggtatggatgacagagga
atagtaattcttatggtggatgaaaaaatgagtccaacaattggcagacagcttttaaag
ggttcagctgatcccttaaacagtgcattccacctgacctacaacatggtattgaacttg
ctccgagtagaagaaattaaccccgaatacatgttagagaaatcattctatcagtttcaa
cattacagagctattccaggagtggtagaaaaggtgaataaattggaagaacagtacaac
aaaatagtaattcccaatgaagaaaatgtggtcatatactacaaaatccgacagcagctt
gcaaaactgggtaaagagattgaagaatatattcacaagccaaagtattgcttgcccttc
ctacagccaggaagactggtaaaggtgaaaaatgaagatgatgactttggatggggagtg
gttgttaatttctcaaagaaatccaatgttaagcctaattctggtgaattggacccatta
tatgtagttgaagtgctcctgcactgcagcaaagagagtctgaaaaattctgctactgag
gctgcaaagccagcaagacctgatgagaaaggagagatgcaggtcgttcctgttctggta
catctcctctcggccatcagcagtgtcagactttacataccgaaagacctgaggcctatt
gacaacaggcaaagtgtgctgaaatctatacaggaagtacagaagcgatttcctgatggg
atacctttattagatcctattgatgacatgggtatcaaagatcaaggactgaaaaaagtc
atccagaaagtagaagcatttgagcataggatgtattcacatcctcttcataatgatccc
aatttagaaactatatataaactttgtgaaagaaaagcacagattgctatggatattaaa
gcagcaaagcgagaactgaaaaaggccagaactgtcttacaaatggatgaactcaagtgc
cgcaagcgtgttttgagaaggctgggctttgccacatcttccgatgtcattgagatgaaa
ggacgtgttgcctgtgaaatcagcagtgctgatgaacttctcctgacagaaatgatgttt
aatgggctcttcaatgacttatctgcagaacaggcaactgcactgctaagctgttttgtc
tttcaagagaactctaatgaaatgccaaaactgacagagcagctggcaggacctcttcga
caaatgcaggagtgtgctaaaagaatcgccagggtatcagcagaagcaaaactggaaact
gatgaagaaaactacttaaattctttcagacccaatctcatggatgttgtgtacacatgg
gcaaatggagctagctttgctcacatttgcaaaatgactgatgtctttgaaggtagcata
attcgttgtatgagacggctagaagaattgcttcggcaaatgtgtcaggcagcaaaagca
attggaaacacagagctggaaaataagttcgcagagggtattacaaaaatcaagagagat
attgtgtttgcagcaagcctttacctgtaa
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integrated database retrieval system
