Phasianus colchicus (Ring-necked pheasant): 116241931
Help
Entry
116241931 CDS
T07365
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116241931 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoc03021
]
116241931 (PCF11)
03019 Messenger RNA biogenesis [BR:
pcoc03019
]
116241931 (PCF11)
Transcription machinery [BR:
pcoc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116241931 (PCF11)
Messenger RNA biogenesis [BR:
pcoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116241931 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
116241931
NCBI-ProteinID:
XP_031468302
Ensembl:
ENSPCLG00000020501
UniProt:
A0A669QXW8
LinkDB
All DBs
Position
Unknown
AA seq
1694 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTASTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSMPSVPTPSKPHVSQTPHMTVKTPTQASLQSEKIKPSPSPPLHDVKIVNRDPRLNRM
SQHSSHAKDQSHRKEFPPNTTGQSDTKASKTSQSEKQSSTKQEKLKAGEKTQKKEPDQVE
TKSKSPSPLKNKLPNTKDNKTQESESTKVSEMSKRDPRLKKHLQEKPESKGDEVKEKRRN
TEKKEKDEHKTGEHRPVGSRNKTVNGVVQKQDVTTEESEKQGGKQGRSSNRKRSRSRSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHAEEASQGARDERNSN
KRNVKQEVRDPRRVKKSQEDRPQEIASQHSTKASPDPKENAENWQGSKAGKRWKSGWEEN
KNSQQTEEHQAVGKSPHQRHRENWPAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLASGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKGSLKRKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHVPDALLSGVDCEQAKAKRGVQFE
RKEPFGERSRRHSPVSGTSRPFAENLSPLEGRRRLEEQNATKGGRGSKNFDPYDNWGESD
EFRDALRQQGKGTAEFQKIDGDAVCRFDNREERQLLGKAGVRDEPRSPFNERFKRARYED
PDKEPFPDSPGSRFGGIEAKPRISALMEDRPLFDGSSRPSAARVGADGQGSPFIDSPTAG
SSSRIDGPPGQAALRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPQ
GQVGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPLGPRGQPGGGLRFEGPHGQPLGPHGQPGSGLRFEGPHLQPLGPHGQPGSGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPPGVGPRLIDGPVHQGVGGLRFDGPLGRTGPRFDGC
HAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQPAQPRFDAAIPQRFDGPHQPASRFDL
PLGLHGARFENMASHPASRLEMSPYGQSGPFVDHPGQGYSGPAHGMQFQRPEIFDSSLGP
NFSGPGGPGAQNFSLRASGHYFDDKLQGPQYGNFNSMSMGGHQVSHMSAQPGPYGQGQQY
LPNPGSFVQNPAGGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQANESSA
QPAAEEEDDDQGDHDVPDLTNFKVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYA
DHLDWHYRQNRSEKDVSRKITHRRWYYSVTDWIEFEEIADLEERAKSQFFEKAHEEVVLK
TQEAAKEKEFQSVPAGPAGAVERCEICREQFEQYWDEEEEEWHLKNAIRMHEKIYHPSCY
EDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETDESCDSPQVKEEPDDTPAACAEEST
PASIDVKTEPDESV
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcgtcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgttggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggacgatattttccctttgaagaaactttatgcacttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcatctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataagacaacaattgcttgccaagcaaaaacagttgttagaacttcagcaaaaaaag
ttagagctggagttggaacagactaaagcacagctggctgtttctcttagcgttcagcaa
ggatcatcttctatgccttcagttccaacaccttccaagccacatgtgtcccagacacct
cacatgacagttaaaacacctactcaggcttcattgcaatctgaaaagatcaaaccatcc
ccaagtcctccacttcacgatgtcaaaatagtaaatagggatcctcgacttaatagaatg
tcacaacattcttctcatgctaaagatcagtcgcataggaaagaatttccaccaaacaca
actggtcagtctgataccaaggcgagcaaaacatctcagtctgaaaaacaaagctcaaca
aaacaagagaaattgaaagcaggtgaaaaaacacaaaagaaagaacccgatcaggtggaa
acaaagtctaaatcgccatctcctttgaaaaacaagcttcccaacactaaagataataaa
acccaagaatctgaaagcacaaaagtatctgaaatgagtaaacgggacccaagactgaaa
aaacatcttcaagaaaagccagagagcaaaggggatgaggtgaaagaaaagaggagaaat
acagagaaaaaagaaaaagatgaacataagacaggtgaacatagaccagtaggcagcaga
aataaaacagttaatggtgttgttcagaaacaagacgtgactacagaagaatcagaaaaa
cagggtggaaaacaagggagatccagtaatagaaaacggtcacgatcccgctctcctaag
tcacggtcaccatctacacattctccaaaacgaagagagaggagatcgcccaaaagaaga
ctcaggagtttatctcccacttcttcaactcctaaaattggaaagatacgtcagataggt
cctaagcagtctcatgcagaagaagcctcacaaggggcaagagatgaaaggaattctaat
aagcgaaatgttaaacaagaggtgcgagatccaaggagagtgaaaaaaagccaagaagac
aggccccaagaaatagcgagccagcattctacaaaagcttctcctgatccaaaggagaat
gcagagaattggcagggatccaaagcaggcaagaggtggaaatccggttgggaggaaaat
aaaaactcgcagcagactgaagaacaccaagcagttggtaaatctcctcaccaaagacac
cgagaaaactggcctgctgctaaaggaattctatcaccccgagcaccaaaacagcagcac
cggttaagtgtggatgccaatttacagattcccaaggagctgacgtctgcaagcaagaga
gaattacttaaaaaggccaatgaccgcttagcatctggtgaaataacacaagatgagttt
ctcgtggtggctcatcagattcgacagctgttccagtaccaagaaggaaagcacagatgt
aatgtgtgggatagcccgacagaagaaaaaggctctttgaaaaggaagcctcttctatct
gatgcggagttaacatactatgagcataaagctaaactgaaaagaacacaagttcagcat
tcattgtcaagacttgacctcttggatcctgatgatattttggattatcatgtaccagat
gcgttgctttctggagtggactgtgagcaagcaaaagcaaagcgtggagtacagtttgaa
agaaaagaaccttttggagaaaggtcaagacggcactcccctgtaagtggcacaagcaga
ccctttgctgaaaacctttcgccacttgagggtcgacgaaggcttgaggaacagaatgcc
actaaaggaggcaggggttcaaaaaatttcgatccttatgacaactggggagaatcagat
gaattcagagatgctctcagacagcagggaaaaggtacagccgagttccagaagatagat
ggtgatgcagtctgtaggtttgataaccgtgaagaaagacagctgcttgggaaagctggt
gttcgagatgaaccaagatcaccattcaatgaacgtttcaaaagagctagatatgaagac
ccagataaagaaccatttccagacagtccagggtcaagatttggaggcatagaagcaaag
ccaagaataagtgcactaatggaagacagacctttatttgatggctcatctagaccatct
gctgcaagagttggggcagatggtcaaggaagcccttttattgatagtcctactgctggt
tcaagttctagaattgatgggccacctggacaagctgctctgagatttgaggggcctttg
gtgggggcaggtgcttctcaatttgatggacccctagcaggagcagggggagctggagcc
ctaagatttgatgggccaccagggcagctggcaggggctctcaggtttgaaggaccacag
ggacaggttggtgggggaggtcctctgaggtttgagggacctcttgggcaaataggtggg
ccgttgcggtttgaggggcctgcaggccagcctgtgggtggtcctagatttgaaggacct
ggagttggtctcaggtttgagggaccccgtggtcaaccttcaggtggtctcaggtttgag
ggacctcatggtcaacctctggggcctcgaggtcagccagggggtgggctcaggtttgag
ggaccgcacggtcagcccctggggcctcacggtcaaccaggaagcggtctcaggtttgag
ggtccacatttacagccactggggccccacggtcaacctggaagtggtctcagatttgag
gggccacatgggcagcctatggggccacatggaccgtccggaggtgggctcagatttgag
gggccacatgggcctccaggtgtagggcccaggttgattgatggaccagtgcaccaggga
gttggtggacttagatttgatggtcctctgggacggactggtccaagatttgatggctgc
catgctgggtttgatggccaacctggacagctgtctcttttgcaaagatttgatggaatt
catggacagcctggcccaagatttgaaagggctcctggccaacccgcacaaccacgattt
gatgcagccatacctcaaagatttgatggtcctcaccagccagcctcaagatttgacctg
cctcttggccttcatggtgcacgttttgaaaatatggccagccatcctgcctcacgatta
gagatgtcgccatatggacaaagtggtccttttgttgaccatcccggacagggctacagc
ggaccagctcatgggatgcagttccaaaggcctgaaatatttgacagttcactaggacca
aatttcagtgggccaggtggcccaggagcacagaatttttcattgagagcatctggacat
tattttgatgacaaacttcagggtcctcaatacgggaacttcaatagtatgtcaatggga
ggtcatcaggtttcgcacatgtctgctcagccaggaccttatggccaaggtcaacagtat
ttaccaaatcctggaagctttgttcagaaccctgcaggaggagccctcccgcattcatat
cctgataaccaccttggtcagcttgatgtcaatgaattgtttgctaaactattgtcaaca
ggaatcctcaaactgtcaaaaacagattccacttcagcacaagcgaatgaatcatcggcg
cagccagctgctgaagaggaggatgatgaccagggtgatcacgatgtcccagacctcaca
aactttaaagttgaagaactcagacagcgttatgacagtgttataaatcgactgtacact
ggaattcagtgctactcgtgtggaatgagatttactacttcacagacagacgtttatgca
gaccatttagattggcattatcgtcagaaccgttcagaaaaagatgttagcagaaaaatt
acacacaggaggtggtactacagtgtaacggattggattgagtttgaagaaatagccgac
ttagaggagcgtgcaaaaagccaatttttcgaaaaagctcatgaagaagttgtactgaag
acacaggaagctgcaaaagaaaaggagtttcagagtgtccctgctggaccagctggagca
gttgagaggtgtgaaatctgccgggagcaatttgagcagtactgggatgaggaagaggaa
gagtggcatctaaagaatgctatcagaatgcatgagaagatttaccatccatcctgttac
gaagattaccaaaacacatcatcatttgattgcacaccctctcccagcaagacccctgta
gaaaatcccctaaatattatgttgaacattgttaaacaggaaacagatgagtcctgtgac
tcacctcaagtgaaagaagaacctgatgacacccctgctgcctgtgcagaagagagcaca
cctgcctctatagatgttaaaacagaaccagatgagtctgtttag
DBGET
integrated database retrieval system
