Phasianus colchicus (Ring-necked pheasant): 116243470
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Entry
116243470 CDS
T07365
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116243470 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pcoc00536
]
116243470 (COL11A1)
Glycosaminoglycan binding proteins [BR:
pcoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116243470 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
DUF4763
Motif
Other DBs
NCBI-GeneID:
116243470
NCBI-ProteinID:
XP_031470562
LinkDB
All DBs
Position
Unknown
AA seq
1856 aa
AA seq
DB search
MKMQRWSTRWKTKRWPRDSAVTALITLAVLLQAAEVRGAEPVDVLKVLEFHNSPEGVSRT
AGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPDGDFPEDFSILMTVKPKKGIQSFLLS
VYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MIVDCNKKTTKPLERSDKPIVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCE
HYSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETDSVTEGPPLFEETIAQ
TEKKKAMVKKKKRTVATSSKDKPQKATTKKSEKYASKKKKSYQAATKDKLGANIVDEFQE
YSIAENDYGPQTEAPSRTTEANEQNPVEEVFAEEYITGEDYDKKTEETEYGNRGVDLSES
DLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVTQHGAYGEKGQKGE
PAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGLPGADGLAGPPG
TMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGRPGPVGGPGAAG
AKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGDRGFDGLPGLPG
DKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAG
IDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGKPGLPGLPGSDG
PPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKG
DMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGVPGLPGYPGRQG
PKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGKPGPKGTSGNDG
PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVG
PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGKDGPAGLRGFPG
ERGLPGAQGPAGLKGGEGPQGPPGPIGSPGERGAAGTAGPIGLPGRPGPQGPPGPAGEKG
APGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG
PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGLPGPPGEKG
ENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGESG
TSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG
VGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGAKGEPGAEGAPG
KTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPLGPPGLPGLKGDPGSKG
EKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGPPGPPGLPGPQG
PKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYMVSDAGDNIL
DYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPDGEYWIDPNQGC
SGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGKLLSYLDVEGNS
INMVQMTFLKLLSASARQNFTYNCHQSVAWHDSSSDSYDKALRFLGSNDEEMSYDNNPYI
KALHDGCASRKGYAKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgcagaggtggtccacgcggtggaaaacgaaaaggtggccccgggactcggcc
gtgaccgcgctcatcaccctcgctgtccttctccaggctgcggaggtcagaggagctgaa
ccagttgatgtgctaaaagtattagaatttcataattcaccagaaggagtatcaagaaca
gcaggattttgcactaacagaagagattcaaaaggctcagatgttgcctacagagtttca
aaaactgcacagctcagtgccccaacaaagcagctgtacccagatggagattttccagaa
gatttttcaatactgatgacagtaaaacctaaaaagggcatccagtccttccttctgtct
gtctacaatgaacaaggaattcagcaagtaggtgttgaagttggaagatcccctgtcttc
ctctttgaagaccaaaatggaaagcctgccccagaagactatcctcttttcagaacagtc
aacattgctgatggcaagtggcatcgagtagccattagtgtggagaagaaaagtgttaca
atgattgttgactgcaacaaaaaaacgacaaaaccactggagagaagtgacaaaccaatt
gtggacactaatggcatcactgtctttggaaccaggattctggatgaagaagtatttgag
ggtgagatccagcagttgttgattatagctgaccccagagctgcatatgactattgcgag
cattatagtccagactgcgattccccagtgcctaatgctgctcaggctcaagatcctcaa
gttgatgagtacacaccagaagattttatcgaatatgactatgagtatggggatgcagat
tataaagaaactgattctgtaacagagggacccccactgtttgaagagacaatagcacaa
acagagaaaaagaaagccatggtcaaaaagaagaagaggacagtggccactagctcaaag
gacaaaccccaaaaggccacaacaaaaaaatctgaaaaatatgcatccaagaagaagaaa
agttatcaagcagcaacaaaagacaaactaggggcaaacattgttgatgaatttcaagaa
tatagcatagctgaaaatgactacgggccccaaactgaagctccctccagaactactgaa
gccaatgagcaaaaccctgttgaagaagtatttgctgaagaatacataactggagaggat
tatgataaaaaaactgaggaaactgaatatggaaacagaggagtagacctcagtgaatct
gatcttctggtagatggagatttaggagaatatgatttttatgaatataaagaatatgaa
gagaaaccgactgattctactaatgaggagtttggtccaggtgttcctgcagagactgat
atcacagaaacaagcgtgactcaacatggggcttatggagaaaaaggacaaaagggagaa
ccagccgtgattgaacccggtatgctcattgaaggaccgccaggaccaagaggacctgct
ggtcttacaggtcccccaggtttacaaggccctgttggtcctccaggtgaccctggtgaa
aggggtccacctggtcgtcctggtcttcccggtgctgatggtttagcaggtcccccaggt
accatgttaatgctgccgttccgctttggtggagatggtgagaagggcccaacaatctca
gctcaggaagctcaagcacaagctattcttcagcaagcaaggattgcaatgagaggtcca
cctggtcccatgggactcactggaagaccaggtcctgtgggaggacctggagcagcaggt
gctaagggagaaagtggtgaaccaggtcctcagggtcctcgtggtgttcaaggtgcccct
ggtccaagtggaaaagctggcaaacggggacggcctggagctgatggtgccagaggaatg
ccaggagaacctggtgcaaagggtgacagaggatttgatggtcttcctggcctccctggt
gacaaaggtaacaggggagaccgtggcccacagggacctcctggcttacctggtgaagat
ggatcaagaggagaagatggggaagttggaccaagaggtctcccaggtgaagctggtcca
cggggactactgggtcccagaggtacacctggtccccctggacaacctggcattgcaggt
attgatggaccttcaggcccaaagggaaacatgggtcctcaaggggagccaggaccccct
ggtcagcaaggaatccctggcccacaaggccttcctggtccacaaggtcctattggacct
cctggtgaaaaaggacctcaaggcaagcctggccttcctggccttcccggttctgatggg
cctcctggtcatcctggcaaagagggtcagtctggagagaaaggtgcattggggcctcca
ggtcctcaaggtccaattggctatccaggtcctcggggagttaagggagctgatggtgtt
cgtggtctcaagggatccaaaggtgaaaagggtgaagatggtttcccaggatttaagggt
gacatgggccttaaaggtgatcggggagaagttggtcaacctggcccaagaggagaagat
ggtccagaaggtccaaaaggtcgagcaggtccatctggggacccaggtgctgctggtcct
gctggagaaaagggcaagcttggtgtacctggattgccaggatatccaggaagacaaggt
ccaaagggctcaactggtttcccaggatttccaggtgccaatggagagaaaggtgcaagg
ggattacatggcaaaccaggccccagaggacagcgaggaccaacaggtccaagaggctca
agaggtccaagaggtcctacaggcaaaccaggtccaaagggtacttcaggcaatgatggt
ccgcctggcccaccaggtgaaaggggaccacaagggcctcaaggacctgttggatttcct
ggaccaaagggacccccaggcccacctggtaaagatggcttgcctggacatccaggacag
cggggtgagactggatttcaaggaaaaactggtcctcctggtcctggtggggttgttggc
cctcagggtcctactggtgagactggcccaattggtgaaagaggtcatccaggtcctcct
ggcccaccaggtgaacaaggcctcccaggtgctgcaggaaaagaaggtgctaagggtgac
ccaggtcctcaaggtattcctgggaaagatggaccagcaggacttcgtggtttccccggg
gagagaggccttccaggagcacagggtcccgctggtctaaaaggaggggaaggcccacaa
ggtccacctggccctattggctcaccaggagaacgtggagcagcaggcactgctggtcca
attggtctaccaggtcgtcctggacctcaaggtcctccaggccctgcaggggagaagggt
gctcctggtgaaaaaggtcctcaaggtccagctggacgtgatggagtacaaggtcctgta
ggacttcctggtcctgctggtccaagtggttctcctggagaagatggtgacaagggtgaa
attggtgaaccgggtcaaaaaggtagtaaaggtgacaagggagaaaacggtcctccaggt
cctccaggtctccagggtcctgttggtgctcctggcatagctggaggtgatggggagcca
ggcccaagaggtcagcaaggaatgtttgggcaaaaaggtgatgaaggtcctcgaggcttc
cctggtcctccaggccctattggcttacagggcttgcctggcccaccaggtgaaaaaggt
gaaaatggtgatgtgggcccaatgggtccacctggtcctccaggtccaagaggtccacaa
ggtcctaatggagctgatggtcctcaaggcccccctggctcaatcggctctgttggaggt
gttggggaaaagggggaacctggagaagctggtaaccctggacctcctggagaatctgga
acatctggtccaaaaggtgaaaggggagaaaaaggtgaggctggtccacctggagcagct
ggaccaccaggtgctaaaggacctccaggtgatgatgggcctaagggtaacccaggtccg
gttggttttcctggagatcctggtccccctggagagcccggtccagctggtcaagatggt
gttggtggagagaagggtgaagatggtgatcctggtcaacctggtccaccaggtccttca
ggagaagctggcccacctggtccacctggaaagagaggacctcctggagcaactggagct
gaaggcagacaaggtgaaaaaggtgcaaagggtgaacctggtgcagaaggagctcctgga
aagacaggtccagttggtcctcagggaccagcaggaaaacctggccctgaaggtctccgg
ggtattcctggccctgtgggagaacaaggtctacctggagcaccaggtcaggatggccct
cctgggcctctgggtccacctggcttgcctggtctgaaaggagatccaggttccaaagga
gagaagggacatcctggtttgattggcctgattggacctccaggagaacaaggtgaaaag
ggtgataggggtcttcctggcccacaggggtctcctggagccaaaggtgatgcaggaatt
tctggtcctgctggtccacttggaccccctggtcctcctggtttacctggtccccaaggt
ccaaaaggttccaaaggatccagtggtcctgctggtcaaaagggtgacagtggtttacct
ggcccacctggtcctccaggtcctccaggtgaagtaattcagccactgccaatccagtca
cccaaaaagactagaagatctccagattacatggtatctgatgctggtgataatattctg
gattattctgatggcatggaggagatctttggttcactgaattcactgaagcaagacatt
gagcatatgaagtatccaatgggcactcagaacaacccagcccgaacttgcaaagacttg
cagctctgccacccagacttcccagatggggaatattggattgatcctaaccagggttgt
tctggagactccttcaaagtgtactgcaatttcacagcaggtggggaaacttgcatctat
ccagataagaaatctgaaggagttagaatttcatcatggccaaaggagaatccaggatct
tggtttagtgaatttaagcgtggcaaacttctttcgtatttggatgttgaaggcaattct
attaatatggttcaaatgacattccttaaactactgagtgcctctgccagacaaaatttc
acatacaactgccatcagtccgtagcttggcatgattcctcatctgacagctatgacaaa
gcactaaggttcttaggatcaaacgatgaagagatgtcttatgacaacaatccttacatc
aaagcccttcacgacggctgtgcatcaagaaagggctacgcaaagacagtgattgaaatc
aacacacccaaaatagaccaagtgcctatagttgatgtgatgatcaatgactttggcgat
cagaaccaaaagtttggatttgaggttggtcctgtctgcttccttggctaa
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integrated database retrieval system
