Phasianus colchicus (Ring-necked pheasant): 116243853
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Entry
116243853 CDS
T07365
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcoc03036
]
116243853 (CHD9)
Chromosome and associated proteins [BR:
pcoc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116243853 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
116243853
NCBI-ProteinID:
XP_031471158
Ensembl:
ENSPCLG00000020720
LinkDB
All DBs
Position
Unknown
AA seq
2892 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAP
NQQKLSDFEQLNQYDSLKLHQVNQSFNSSTDNVLSPHSQFNCSPIHPQNQTNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRSQQ
SRSNTGQDALSQPKDFLEVSVSTSHRVSVNHPPPVSNPSTSQQPLSVQPFSQTASASLHF
CGNQEGTFGGQSPTITPCSVNNSQQFSSPYSYSNNHISPTSLLQSTTALSSSQQTHPISD
FTGSDAFTSQTGTKQDTTEHMLNANTPLNSNSFQMLHSSHPQGNFSSSKLSPVSISFPAS
AGSASQISHFTDPIESNGFTSLDDNLLHQVDAPNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLDHDLEDHITPHPVTQSSDIVRAQSQTQIHPWHSSVSSQHLQDRSRVTFQGQP
PSSKKTDGSGSHTKSQNTQVRAMSEKKQRKKADSESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKTKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQKSLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAKASAK
IKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRIIKKEISAGMTVETEEFFVKYKNY
SYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSL
CEDKDTGEPVVYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPPN
SWKKIEHSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL
LSGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRIV
RGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVL
LTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKC
CNHPYLIKGAEEKILGEFKETYSPTAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNSL
VIDTPRIRKQTRPFSATKDELAELSEVESEGEDKPKLRRPCDRSNGYGRTECFRVEKNLL
VYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTEDG
QTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGNEFQKVFDGTDASEIDVWVPEPDHSEVPAEWWDAEADKSL
LIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYIDGDVEDPEYKPAPAM
FKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQQ
IQPAFPVQTSMMQPPYEEVALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERGR
FDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASR
TLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRTD
YHILRDPELSFMSAQRNYSQNKVALSRTSTPLLHQYQMALSASPLTPQSRLPDAKVNALE
DMKVKNENLKEDAQSSEEESMSTEETQTVMKSEPLSPKNGAPVQNTEHKPSVKIETDRRM
VAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSG
SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDEESVA
SLSTTHDETQDSFQMNNGTPNSSYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWP
SARRNYDSNTVASFYTTKLLDSPGAATDYSEPGAPTPPLAVVKEEYDQSPQMSKVKKHVR
EKEFTVKINDEGGLKLTFQKQGLSQKRPFESEEGALGQQQYLARLRDLQNASETSLVNFP
KSLPESGTSSHLTASANGVIVDSQPVLKKRRGRRKNVEGVDVLFVNRNKQPNHVNPGINS
CQVAAGINPALNYTQSQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYVE
DLGACIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLK
DLCRFLKENPEYGVAPEWGEIVKQSGFLPEGMFERILTGPVVREEVSRRGRRPKSEIAKA
TAAAAAATAASVSVNPLLTNGLLPGVDLSSLQALQQNLQNLQSLQVTAGLMGMPAGLTTG
GEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKSTESISEDKKGSDLKEADIKKERTEDQN
TDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIFD
VQNSESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDSTS
SSSEDSDSSDED
NT seq
8679 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagcgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattaaat
ttaggtgcagaatttgaacctttgcacatagactcattgaatcatgtgcaggatgctccg
aatcaacaaaagttgagtgactttgaacagctgaatcagtacgattccctgaaacttcac
caagtgaatcagtcttttaatagctccacagacaacgtcttgtcaccacactctcagttc
aattgttcaccaattcatccgcaaaaccagactaatgggatgtttccagatgtggccgat
ggtagtcctatgtggggtcatcaaactgccacaactgtttcaaatcaaaatgggtccccc
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacgatcgcaacaa
agcaggagcaacacggggcaagatgctctgagtcagccaaaagacttcttggaagttagc
gtatctacttctcacagagtcagtgttaatcacccacctccagtttctaatccttcaact
tcacagcagcctctgtctgttcagccgttttctcaaactgcaagtgcttcgttacatttt
tgtgggaatcaagaaggaacttttggtggacagtccccaacgattactccgtgttctgtc
aataatagccaacaattttcatctccttattcttattctaataaccacatttctcctacc
agccttcttcagtctaccacagctctttctagtagccagcagacacatccaatctctgat
ttcactggaagtgatgcctttacatctcaaacggggaccaagcaagacacaactgagcac
atgttaaatgctaatacacctttgaattcaaatagttttcaaatgttgcattcttcgcat
cctcagggcaactttagtagttcaaaactctctcctgtgagtattagttttccagcttct
gctggttctgcttctcagataagccatttcactgaccctattgagagcaacggttttaca
tctttggatgataacttacttcatcaagttgacgctccaaatgaaccatttacaggactc
gacccagatgacctccttcaggaagatcttctaccacagtttgatgattctgcatttgtt
caggatagcacaagccatgttttagaccatgacctagaagaccacataaccccgcatccg
gtaacgcagtcatctgatattgttcgggcacagtctcaaactcagatccatccctggcat
tcttcagtttctagtcagcatctgcaagacagaagtcgtgtaaccttccaaggacagcct
ccttcctccaagaagaccgatggttcaggatcacatactaagtcacagaatacccaggtg
agggcaatgtcggaaaagaagcagaggaaaaaagcagactctgaaagtaaacaagagaag
gcaaatcgcataatatctgaagcgattgcaaaagcaaaagagagaggagagagaaacatc
ccacgagtaatgagtccagaaaacttccccagtgtttcagctgaaggaaaagaggaaaag
aaaggtagaaaagttaaatcgaaacccaaggacaaggaaagtaaaaagccaaaaactggt
tcctcatccaaaactaaagagaaaacaaaaattggaaagctaatcatcacgctgggtaag
aaacagaaaagaaaaaatgaatcttcagatgaattgtctgatgctaagcagactccacag
aagtcattgaaagatgaagattcacagaagagaagatcaaatcggcaagttaaaaggaaa
aagtatgctgaagaaggagaaggaaaacaatcggaagaagaagctaaagcttctgcgaaa
atcaaaaagaattctgctcctttacctgctgagcagcctttacagttatttgtggagaat
ccaagtgaagaagatgcagcaattgtagataaaatcttatcctctagaataataaagaaa
gaaatatctgctgggatgacagtagaaacagaagagtttttcgtaaaatacaagaactac
tcttatctccactgtgagtgggccacagaacagcagcttttaaaggataaaagaatccag
cagaaaataaaacggttcaaactaaggcaagcacaaagagctcacttttttgcagatatg
gaagaagaaccttttaatcctgactatgttgaagtagaccgggtattagaagtctctctt
tgtgaagataaagacactggtgagcctgttgtttactatttagtaaaatggtgttcattg
ccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaagaa
tttgaacaattgcaagcttccaggcctgactcaaggagattggaccgaccacctccaaac
tcgtggaagaagatagaacactcaagggaatataaaaatggcaatcagctcagggaatat
caactggaaggacttaactggcttctattcaactggtacaatagacgaaattgcatttta
gcggatgaaatgggtcttggcaaaaccattcagtcaattacattcctctatgaaatcctc
ctgtctggtataagagggccttttctgatcatagctccactttccactataacaaattgg
gaaagagaatttcgcacgtggactgaccttaatgttgtagtgtaccacggaagtatgatc
agcaggcagatgattcagcaatatgaaatgtacttcagggactcccagggacgtattgtt
cgaggcacctacagattccaagccattatcacaacttttgaaatgattcttggtggctgt
ccagagctgaatgcaattgagtggcgatgcgttattattgacgaggcacacagactgaaa
aacagaaactgcaaactgttagaaggactaaaattaatgaacctcgaacataaagtgctg
ttaactggtacaccactgcagaacacagtagaagagttatttagtcttcttcattttctt
gaaccattgcgttttcctgctgaatcaacattcatgcaagaatttggagaccttaaaaca
gaggaacaggttcagaaattacaagctatcctgaaacccatgatgctcaggcgattaaaa
gaagatgtagaaaaaaagctggctcctaaggaagagacaataattgaagtagaactaact
aatattcagaagaaatactatcgagcaatcttggagaaaaattttgctttcttatctaaa
ggagctgggcaagcaaacgtaccaaatttggttaacactatgatggaactcagaaaatgt
tgtaatcatccttatctcatcaaaggtgctgaagagaagatccttggagaatttaaagaa
acttacagcccaactgctccagacttccatctacaagcaatgatccagtctgctggtaaa
ttggttcttattgataaacttcttccaaaaatgaaagcaggaggccacaaggtccttatc
ttctctcaaatggtgcgctgccttgatattttggaggattaccttatacataaaaggtac
ttatatgaacgaattgatggacgagtacgaggcaacctcaggcaagctgcaattgaccgg
ttcagcaaaccagattccgatcgctttgtgttccttctctgcaccagagctggtggtttg
gggattaatttgactgcagcagatacgtgcataatttttgattcagactggaatcctcaa
aatgatctgcaggctcaagcccgttgtcacaggattggtcagaacaaagcagtgaaggtc
tacaggctgataactcgtaactcatatgaaagagagatgtttgacagagcaagtttgaag
ttgggactggataaggctgtcttacagagtatgagtggaagagaaaacagtgttggtggt
atccaacaactctctaaaaaagaaatagaagacttgcttcgaagaggtgcgtatggtgcc
attatggatgaagaagatgagggctccaaattctgtgaggaagacatcgaccaaattttg
cagcggcgtaccaaaactatcacaattgaatcagaaggaaggggctccacatttgccaag
gctagctttgttgcatctggaaacaggactgatatttctctagatgatcccaacttctgg
cagaaatgggccaaaaaagcagaaatagatatagatgctatcagtggccgaaacagcctg
gttattgataccccacgaattagaaaacaaacaaggcccttcagtgctacaaaagatgaa
ctggctgaattgtctgaagtggagagtgagggggaggataagcccaaactccgccggcct
tgtgaccgttccaatggatatggaagaacagagtgctttcgggtggagaaaaacttactg
gtctatgggtggggtcgatggagagagattttatcacatggtcgcttcaagagacagcta
aatgaacaggacgtggagataatttgccgagctctcttagcctattgtcttgttcactac
agaggggatgagaaaataaaaagttttatatgggatctgattactccaacagaagatggg
caaacacgagagttgcagaatcatcttggcctgtcagcacctgtgcctagaggaagaaaa
ggaaaaaaagtgaagacccaggctagcacttttgatatacacaaagcagaatggcttcga
aagtacaatccagaacatctgttgcaagatgaaggatacaaaaagcacataaaacaccac
tgcaacaaggtcttgcttcgagtaagaatgctgtattacttaaaacaagaagttattggt
aatgaatttcaaaaagtgtttgatggaactgatgccagtgaaattgatgtttgggtccct
gagccagatcactctgaagttcctgctgagtggtgggatgcagaggcagacaaatccctt
ctaattggagtttttaaacatggttatgaaaaatacaacacgatcagagcagacccggca
ctgtgcttcttggaaagggttggcaagccagatgataaagcagttgctgctgagcagaga
gcaaatgattatattgatggggacgttgaagatccagagtataaaccagcaccagcaatg
tttaaagatgatatagaggatgatgtttcatccccaggtgatctagtaatagcagatgga
gatgggcaaatgatggaaggtgacaaaatctattggccaactcagtctgccttaacaacg
cgccttcgccgcctgataacagcttatcaaagaacaagtaaaaataggcaggcccagcag
atccagccagcattcccagtgcaaactagtatgatgcagcctccatatgaagaagttgct
ctaaatccaaagatggctgctaaaatagaaagacagcaaaggtggacaagaagggaagaa
gctgacttctacagagttgtgtccacgtttggagtggtatttgatcctgaacggggacga
tttgattggaccaaattcagagctatggctaggctgcataagaaaactgatgagagctta
gagaaatacctgtatgcatttatgtcaatgtgcaggagagtctgtcgtctcccctcaaaa
gaagaactggtagacccaaacatttttatccaaccaattacagaggagcgtgcctctcgg
actttgtatcgcattgagcttctaaggaaggtgcgagaacaagctcttagacatccacag
ttgtttgaacgactaaagctatgtcagccaaacccggacttacctgtctggtgggaatgt
gggactcatgacagggatttacttattggagctgctaaacatggggttagcaggacagat
tatcatattcttcgtgatcctgaactctcatttatgtctgcgcagaggaactatagtcag
aacaaagtggcactgtcaaggacttctactccactcttacatcagtatcagatggcatta
tctgcttctcctcttacacctcagtcaagattgccggatgctaaagtgaatgctcttgag
gacatgaaagttaaaaatgaaaatctgaaagaggatgctcagtcatctgaagaggaatct
atgtctacagaggagacgcagacagtaatgaaatctgagcctctgagtccaaaaaatggt
gcaccagtacaaaatacagaacacaaacctagcgtgaagattgaaacagacaggcgcatg
gttgcagcaaggacagagcctctaactccaaacccagcttccaaaaaacagagagtcagc
aaaagaggatcggactctagctctgactcagactctgactcagatagatcatcctgttct
tccaggtcatcttcttcatcctcttcatcttcctcatcttgttcacactctcgatcaggc
tctagttcttcgtcatcttcatcttgttcttcagcatcttcatcctcatcatcttcatcc
tcatcgtcgtcgtcgtcatcatcatcatcgtctgaagagagtgatagtgatgaagaggag
gcacaaaaacgtgcagaaggaactcctcatataaaagcatatgatgaagagagtgtagct
tctctgagtacaacacacgatgagacacaagacagtttccagatgaataatgggacacca
aattccagttatctcctacaaggtggatacatgttggctgcatcttactggccaaaggat
cgagttatgattaaccggcttgatagcatttgtcaaacagtgctgaagggtaaatggcct
tcagcaagaaggaactacgacagcaatacagtggcatctttctacacaaccaaacttctg
gatagtccaggcgcagctacagattacagtgagcccggtgcaccaacaccccctcttgca
gttgttaaagaagaatatgatcagtcaccacagatgtcaaaggtgaagaagcatgtacga
gaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcagaag
cagggactgtctcagaaaaggccatttgaaagcgaggagggtgcactgggacagcagcaa
tacctggctcggctacgtgatctccagaacgcttcagaaaccagccttgtcaacttccca
aaatcacttcctgaatcaggtacttccagtcacttaacagccagcgccaatggagtgata
gttgatagtcaacctgtgctcaaaaagagaagagggagaaggaagaacgtggaaggagtt
gatgtcctctttgtaaacagaaataagcagcccaatcatgtaaatccaggtattaactcg
tgtcaagttgctgctggaataaacccagcactcaattacacacagtctcaaggcatgctt
gatgcagagagtccagttcctgttattaacctaaaagatggaacgaggctggcaggtgat
gatgctcccaaaaggaaagatttagaaaggtggctgaaggaacatcctggctatgttgaa
gatttaggagcttgtattcctagaatgcagctgcatgaagggaggcccaaacaaaaacga
caccgttgtcgaaaccctaataaactagatgttaatagtttgactggtgaagaacgtgtc
cagctcataaatagaagaaatgcaagaaaggtggggggtgcatttgctccccctctgaag
gatttgtgccggttcttgaaagaaaatccagagtatggagtggctccggaatggggagaa
attgtaaaacagtctggatttctgccagaaggtatgtttgagcgtattctcaccgggcct
gttgtgcgggaagaagtaagccggaggggaaggcgccccaaaagtgagattgctaaggca
acagcagctgcagctgctgccactgctgcaagcgtatcagttaaccctctgctcaccaac
ggattgcttccgggagtggatctgtccagtcttcaggccttacaacaaaacctgcaaaat
ctgcagtcactgcaagtaacggcaggattgatgggaatgccagctggcttaactactgga
ggagaagctaagaacatggctgccatgttccccatgctgctgtcagggatggctggatta
ccaaacttgctgggcatgggaggacttctgacaaagtctacagaatctatttcagaggat
aaaaagggaagtgacttgaaagaggcggatataaagaaagaaaggacagaagaccaaaat
acagatactggtggtgaaaactctgtttcaagctctccttcaacatcctctgctgctgca
gctgccaatcctctctctcttaacccattacttttgtccaacatactttatccagggatg
cttctcactccaggccttaatcttcatatcccagctttgtctcagtctaatatttttgat
gtacagaacagtgaaagtaatgacacgggctcagccaagcctacggaagaaaaggaggaa
aattctcgggttagagatcaggaagacaaagggggaacagagccaagctctcacaatgaa
aacagcacagatgaaggttcagagaaagcagatgcttcatctggatctgatagtacatcg
tcttcatctgaggattcagattctagtgatgaagactga
DBGET
integrated database retrieval system
