Phasianus colchicus (Ring-necked pheasant): 116244032
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Entry
116244032 CDS
T07365
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pcoc
Phasianus colchicus (Ring-necked pheasant)
Pathway
pcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116244032 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoc03019
]
116244032 (CNOT1)
Messenger RNA biogenesis [BR:
pcoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116244032 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116244032 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
116244032
NCBI-ProteinID:
XP_031471401
Ensembl:
ENSPCLG00000019907
LinkDB
All DBs
Position
Unknown
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVTTDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLSQPTFQQSKMKPSDLSQVWPEANQNF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHE
VRQGEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacaacacattgtgaacaggcacggt
cccgaggcagacaggcacttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatccattgcac
tatcagaagagtctgaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatatttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccagaccttttacgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcatttggggtgggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagttctctggcagactttatgcaa
gaagttggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggagttcgggaggtgacggctgcccaggttgccagggttctggggatgatggctcggact
cattcggggttgacggatggtattccattacaatctatttcggctcccggcagtgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaggagctgaatcctagcttggacttcaaagtagtaacctatgaa
ttggaccacccaggatttcagattcgtgacagcaaaggcctgcatattgtggtgtttggc
atccagagagggctaggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcattcaacattccctcataaacccggacatcttttgt
tttgctgactacccttgtcatactgttaccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgaatctctgttacggttg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcccatcaagcactgc
ccagatatgttggtattggccctattgcagatcaacacttcctggcataccttgcgccac
gaactcatctccacactcatgccaatcttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatgggcagggtcagtctccttcgattcgccagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgagaatacctcaaacttgacaaatgg
ctcacagacaaaattcgggagcatggggagcccttcatccaagcctgcatgaccttctta
aagagaagatgtccatccatcctaggcggccttgctcctgagaaagatcaacccaaaagt
gctcagcttcctccagaaaccttggcaactatgttggcatgcctgcaggcttgcgctggg
agtgtttctcaggagctatcagaaaccatcctcaccatggtagccaactgcagtaatgtc
atgaataaggccaggcagccaccacctggagtcatgcccaaaggccgcccacccagtgcg
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcatctctg
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcatttccccctctttccacccaa
aaccagacaacaggtttcagtggcattggaggactctcttcacagcttccagtaggaggt
cttactacgggtagcctgactggcataggaactggagccttgggccttcctgcagtgaac
aatgacccattcgtgcaaaggaagctgagtacatctggactgagccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagaacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatctataaccatccacca
catccaaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgcatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagacaaagagctgcacattacggcctgcctgtttggtgggata
atagagaaaggactggttacttacatggctttgggcctggcccttcgctacgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttgcaggagtacatagaatatggacaacagtctagagat
cctccagtgaaaatgcagggttcaatcaccacccctggaagcattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccatcaccatcactcgaccaacaggagtc
agcttcaagaaggatgtgccgccttccattaatactaccaacattgatacgctgttagtt
gcaacagatcaaactgagagaattgtggaacctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtcccagtcaaacatgacacagaaggttgaagaactgaaggaa
acagtgaaagaagagttcatgccttgggtatcgcagtatctcgtgatgaagagagtcagt
attgagccaaattttcacagcttatattcaaacttccttgacactcttaagaatccagaa
tttaataaaatggttctgaatgaaacttacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctccgaccgttccttgttaaagaaccttggtcactggctggga
atgattacactggctaaaaataagcccatcttgcacacggatttggatgtgaagtcacta
ctactggaagcatatgttaagggacagcaggaattgctttatgtagtaccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccatcatgaatgttttagctgagctgcatcaagaacatgatctaaaattgaatctgaag
tttgagattgaagtgctctgcaagaatcttgcactggacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaagatgtgaagcagccagaagagctaccacccatcacaaccaccactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctcctcagccccagtacagttatcat
gacatcaatgtctattcgttaggagggttggctccacatattaccttaaatccaacgatc
ccactgtttcaggcccacccccagctgaagcagtgcgtgcggcaggctatagagcgagcg
gtgcaggagctcgtccatcccgtggtcgatcggtccattaagattgccatgactacttgt
gagcagatagtcaggaaggactttgcactggattctgaggagtcacgaatgcgtgtggct
gcacaccatatgatgaggaacctgactgctgggatggccatgatcacctgcagggaacct
ttgctcatgagcatagctaccaacttgaagaacagttttgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagctggcacaggataactgt
gagctggcatgctgctttatccagaagacagctgtggaaaaagcaggccctgaaatggac
aagaggctggcgactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaagctgaacggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgtaacgtccct
ggcttcttgcctaccaatgacttaactcagcctacaggattcttggctcaacctatgaag
cagcaagcttgggccaccgatgatgtagcacaaatctatgacaaatgcatgacagaactg
gagcagcacctacagtccattccccatactctggccatgaatcctcaagctcaagcatta
cgcagcctcctggaggctgtggtggttgctcggaactcccgtgatgccatcgctgcgctc
ggactgctgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgac
ctcctgcttcgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggacggccgt
gcgtacggatctccgtggtgtaacaagcagattactaggtgcctgattgaatgtagagat
gagtacaagtacaatgtggaagcggtggagctgctaatccgcaatcacctggttaacatg
cagcagtatgatcttcacctggcacagtcaatggagaacggcttgaactatatggctgtg
gcatttgccatgcagttggtaaagatcctccttgtggatgagagaagtgttgcccatgta
acagaggcagatctgttccacaccattgagacgctcatgaggattaatgctcattccaga
gggaatgccccagaagggttaccccagttgatggaagtggtccgatcaaactacgaagca
atgattgaccgtgctcacgggggtcccaatttcatgatgcattctggaatttcccaagcc
tctgaatatgatgatccaccaggtctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcagctgcagcaggccgcgacagtaccaaagcgttctctgctttt
gttggacagatgcaccagcaagggatcctgaaaacagatgacctgatcacccgctttttc
cggctttgcactgaaatgtgtgttgaaatcagctatcgtgctcaggctgagcaacagcac
aaccctgctgccaaccccactatgatccgagccaagtgctaccacaacctggatgccttt
gtgcggctcattgcactgctggtgaaacactctggagaagcaaccaacactgtgacaaag
atcaacctcctgaacaaggttcttggtattgtggtgggagttcttctgcaagaccatgag
gttcggcagggtgagtttcagcagcttccttaccatcgcattttcatcatgttgctgttg
gaattaaatgctcctgagcacgtgctggagaccatcaacttccagacactcacagcattc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtatgcccagttactgattgatcttttcaagtacttggctccttttctc
agaaatgtggaactcaccaaacctatgcaaattctttacaagggcactctgcgtgtgttg
ctggtcttgttgcatgatttcccagaatttctttgtgactaccattatgggttctgcgat
gtcatcccacctaactgtattcagctaaggaatttaatcctgagtgccttcccacggaac
atgaggcttccagaccctttcacccccaatctaaaggtggacatgttgagtgaaattaat
attgctccacgaatcctcaccaatttcactggagtgatgccacctcagttcaagaaagac
ttggattcctatctcaaaacccgttctccagtcacttttttgtctgacttgcgcagcaac
ttacaagtatcaaatgaacctggcaaccgctacaacatccagctgattaatgccctggtg
ctctacgtaggcactcaggctattgcgcacatccacaacaaaggcagcacgccctccatg
agcaccattacccactcagcacacatggacatcttccagaatttggcagtggacctggac
accgaaggtcggtacctcttcttgaatgcaattgccaatcagctgcgataccccaacagt
catacccactacttcagctgcaccatgctttacctgtttgcagaggccaacactgaggct
atccaggagcagatcacgagggttctcttggaacgactgattgtaaataggcctcatccc
tggggtctcctcattactttcattgagctgataaaaaacccagcatttaagttctggaac
catgaatttgttcactgcgctccagaaattgagaagttgttccagtcggttgcacagtgc
tgcatggggcagaagcaagcccagcaagtaatggaggggactggtgccagttag
DBGET
integrated database retrieval system
