Pseudomonas coronafaciens pv. oryzae: POR16_00805
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Entry
POR16_00805 CDS
T08147
Symbol
gabD
Name
(GenBank) NADP-dependent succinate-semialdehyde dehydrogenase
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof00250
Alanine, aspartate and glutamate metabolism
pcof00310
Lysine degradation
pcof00350
Tyrosine metabolism
pcof00650
Butanoate metabolism
pcof00760
Nicotinate and nicotinamide metabolism
pcof01100
Metabolic pathways
pcof01120
Microbial metabolism in diverse environments
Module
pcof_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
POR16_00805 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
POR16_00805 (gabD)
00310 Lysine degradation
POR16_00805 (gabD)
00350 Tyrosine metabolism
POR16_00805 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
POR16_00805 (gabD)
Enzymes [BR:
pcof01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
POR16_00805 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
POR16_00805 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
POR16_00805 (gabD)
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Motif
Pfam:
Aldedh
DUF1487
Motif
Other DBs
NCBI-ProteinID:
QGL54971
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All DBs
Position
163568..165010
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AA seq
480 aa
AA seq
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MQLKDSTLFRQQAYINGQWLDADGGQSIKVNNPANNEILGTVPKMGAAETRRAIEAADKA
LPAWRALTAKERGNKLRRWFELMIENQDDLGLLMTLEQGKPLAEAKGEITYAASFIEWFA
EEAKRVYGDVIPGHQPDKRLIVLKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK
PASQTPFSALALAELAERAGIPAGVFSVVTGSAGDIGSELTGNPIVRKLSFTGSTDIGRQ
LMAECAKDIKKVSLELGGNAPFIVFDDADLDKAVEGAMISKYRNNGQTCVCANRIYVQDA
VYDAFAEKLKAAVGKLKIGNGLEEGITTGPLIDDKAVAKVKEHIADAVAKGATVLTGGNS
LEGSFFEPTILVNVSKDAAVAREETFGPLAPLFRFKDEAEVIEMANDTEFGLASYFYAQN
MSRVFRVAEALEYGMVGINTGLISNELAPFGGIKSSGLGREGSKYGIEDYLEIKYLCLSV
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaaagattccaccctgttccgccagcaagcctacatcaacggccagtggctg
gacgcggacggtggtcagtcgatcaaggtcaacaacccggccaacaatgaaatcctcggc
actgtgccaaaaatgggcgcggccgagacgcgtcgggcgattgaggcggccgacaaggcg
ctgccggcctggcgtgcgctgaccgccaaggagcgtggcaataagctgcgccgctggttc
gagctgatgatcgagaatcaggacgacctgggtctgttgatgacgctggagcagggcaag
ccgctggctgaagccaagggcgagatcacctacgctgcgtcattcatcgagtggttcgcc
gaagaagccaagcgcgtctatggcgatgtgatccctggtcaccagccggacaagcgtctg
attgtgctcaagcagccgatcggtgtgacggcggcgattacgccttggaacttcccggcg
gcaatgatcacccgcaaggccggtcctgcgctggcggcgggttgcaccatggtgctcaag
cctgcgtcgcaaacgccgttttctgcactggcgctggctgaactggccgagcgtgcgggc
atcccggcgggcgtgttcagtgtggtaacgggcagcgcgggcgatatcggcagcgagctg
accggtaacccgatcgtgcgcaagttgtccttcacgggctcgaccgacattggtcgtcag
ttgatggctgaatgcgccaaggacatcaaaaaggtgtcgctggagttgggcggcaacgcg
cctttcatcgtgttcgacgatgccgacctcgacaaggcagtcgaaggcgcgatgatttcc
aagtaccgcaacaacggccagacctgcgtctgtgccaaccgaatctatgtgcaggacgct
gtgtatgacgcgttcgccgagaagctcaaggccgcagtcggcaagctgaagatcggtaac
ggtcttgaagaaggcatcaccaccggcccgctgatcgatgacaaggctgtggccaaggtc
aaggaacacatcgccgacgcggtcgccaaaggcgcgacggtgctgaccggcggcaacagc
ctggaaggctcgttcttcgagccgaccattctggtcaacgtgtcgaaagatgccgccgtt
gccagggaagaaaccttcggtccgctggctccgctgttccgcttcaaggacgaggccgaa
gtgatcgagatggccaacgacaccgagttcggtctggcgtcgtacttctatgcgcagaac
atgagccgcgtgttccgggtcgccgaggcactggaatatggcatggtgggtatcaacacc
ggcctgatctccaacgaactggcaccgttcggcggtatcaagtcttcgggcctgggccgt
gaaggctccaagtacggcatcgaagactacctggaaatcaaatacctctgcctgtcggtt
tga
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