Pseudomonas coronafaciens pv. oryzae: POR16_02270
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Entry
POR16_02270 CDS
T08147
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcof03009
]
POR16_02270 (dbpA)
Enzymes [BR:
pcof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
POR16_02270 (dbpA)
Ribosome biogenesis [BR:
pcof03009
]
Prokaryotic type
rRNA helicases
POR16_02270 (dbpA)
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
PRAI
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QGL55244
LinkDB
All DBs
Position
complement(486870..488249)
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AA seq
459 aa
AA seq
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MTNTAFNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGI
GLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSL
EHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQ
TLLFSATYPVGIKQLSSKFMRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVIGHF
RPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATD
VAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEEL
QKAPLNWQQYDKLSIKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGK
IAIFDFQAYVAVERSMAKQALERLNNGKIKGKSLRVRIL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtgactaacaccgctttcaattctctgcccctgtctgctgccatgctggctaacctggag
tcgcttggttatgccgagatgacgccgatccaggcgcagagcctgccggtgatcctcaag
ggcatggacctgatcgcgcaagccaagaccggtagcggcaagaccgctgcgttcggcatc
ggcctgctcaacccgatcaacccgcgcttcttcggttgccaggcactggtcatgtgcccg
acccgcgagctggcggatcaggtggccaaggaaattcgtcgtctggcccgctcggaagac
aacatcaaagtgctgaccctgtgtggcggcgtgtctttcggcccgcagatcggctcgctc
gagcacggcgcgcacatcatcgtcggcacgccaggccgcattcagcagcatctgcgcaaa
ggctcgctggtgcttgacggcctgaacacgctgattctcgatgaagccgatcgcatgctc
gacatgggcttctacgactccatcgctgacatcatcgagcagaccccacaacgtcgccag
accctgctgttctcggccacctacccggtcggcatcaagcagctgtcctcgaaattcatg
cgtgacccgcagacagtaaaagtcgaagctctgcacgccgacagccagatcgagcagatt
ttctacgagatctcccccgagcagcgtctggaagcagtggtcaaggtaatcggtcatttc
cgtccaacgtcctgcgttgcgttctgcttcaccaagcagcaggttcaggaagtggttgat
cacctgaccgccaagggcatgtctgcagtcggcctgcatggcgaccttgagcagcgtgac
cgcgaccaggtgctggcgatgttcgccaaccgcagtacttcggtactggtcgccaccgac
gtagcagcacgcggtctggacatcgatgcgctggacatggtgctcaacgtcgaactggcc
cgcgattcggaaattcacattcaccgcgtgggccgtaccggtcgcgctggcgaaaaaggc
attgcggtcagccttgtggcaccgtccgaaagccagcgtgcgcgcgccatcgaagaattg
cagaaagccccgttgaactggcagcaatacgacaagctgagcatcaaggaaggtggcaag
ctgctgccggccatgaccacgctgtgcatcggctcgggccgcaaggacaaattgcgtccg
ggcgacatactcggcgcactgactggcgaggccggtattgcgggcacccaggtcggcaag
atcgcgatcttcgacttccaggcctatgtcgccgtcgaacgcagcatggccaagcaggcg
ctggagcgtctgaacaacggcaagatcaaaggcaagtcgctgcgcgtgcggattctctga
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