Pseudomonas coronafaciens pv. oryzae: POR16_03430
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Entry
POR16_03430 CDS
T08147
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcof03019
]
POR16_03430 (hrpB)
Enzymes [BR:
pcof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
POR16_03430 (hrpB)
Messenger RNA biogenesis [BR:
pcof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
POR16_03430 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_30
AAA_22
Flavi_DEAD
Cas3-like_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QGL55457
LinkDB
All DBs
Position
751902..754406
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AA seq
834 aa
AA seq
DB search
MIQLPIDTVLPALRQALTTRHEAVLEAPPGAGKTTRVPLALLEETWLSGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLESRVGPKTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRELFRDDQPLKILLMSATLEGERLSALLGDAPVVRSD
GRMFPVAMQWGRPFQPGEFIEPRVVQTVLDALGSESGSLLVFLPGQVEIRRVNQQLAEAL
GERADILLCPLHGELDLSAQRAAIEPAPKGTRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAYGAAEILQ
ADLAGLALQLARWGVTPAQLVWLDIPPAAAYAQAQDLLVRLEALSYQPGQLPALMPHGQA
MAELPAHPRIAHLLLRGHALGLGELACDVAALLGERDILRGGGADLHSRLTLLAGSERAA
RGAQGGVQRAKQLARQYRGYLRGAANSPVSDPDHPRWLGALLALAYPDRVAQQRRAGGAE
YRLANGRAALFAEADALMKQPWLVIADLGSRQGQREERIYLAAEFDPALFDSVLAEQVIT
LDQIDWDEREGVFRAERQRKAGELIISREPLIGLDEAARSHALLALVRRKGLELLPWTPE
LRQWQARVALLRNLDVDKNATSEWPDLSDAQLLATLENWLMPYLGKVTRLSHFGQLDLSS
ILRNLLPWPLPQQLEAQAPQTIQVPSGSNIRIDYNEQPPVLSVRLQELFGLSDTPRIASG
RQVLKLHLLSPARRPVQVTQDLANFWRSTYIDVKKDLKGRYPKLSRNVHQLAYA
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgattcagttacccatcgacaccgtgctgccagccctgcgccaggccctgaccacacgc
catgaagccgtgcttgaagccccgcccggtgcgggcaagaccacgcgggtgccgctcgcg
ctgcttgaggaaacctggctgtccgggcagaccattttgatgctggagccgcgccgtctt
gctgcgcgtgcggcggcggaacggttggccagtgagctgggcgagaaggtgggcgaaact
gtgggttatcggattcgtctggaaagccgggtggggccgaagacgcgtattgaagtggtc
accgaggggattcttacgcgtcgtttgcaggacgatccggcccttgaaggcgtagggctg
ctgattttcgatgagtttcacgagcgtagcctggacgccgatctggcgctggcccttagc
ctcaatggccgcgagctgtttcgtgatgatcaaccgctgaaaatcttattgatgtcggca
acgctggaaggcgagcggctttcggcgttactgggcgatgcgccagtggtgcgcagtgat
gggcggatgtttccagtagcgatgcagtgggggcgtccttttcagccgggtgagtttatc
gagccgcgtgtcgtgcagacggtgctggatgcgctgggcagcgagtccggcagcctgctg
gtgtttctgccggggcaggtcgagattcgtcgggtcaaccagcagttggcggaagcgctg
ggcgagcgcgccgatattctgctctgccctttgcatggtgagcttgacctcagtgcgcag
cgcgcggccattgagcccgcgcccaaggggacacgcaaggtggtgctggcgaccaatatc
gccgaaaccagcctgaccatcgacggcgtgcgtgtggtgatcgatgccggattggcgcgg
gtgccacgtttcgatccgggcagcggtatgacgcgcctcgacacccagcgtatctcacgg
gccagcgctactcagcgggccggacgggcagggcgactggagccaggcgtttgttatcgg
ctgtggtccgaggcgcagcacgatcagctggctgcctacggggcggcggaaattcttcag
gcagacctcgccgggcttgcgctgcaactggcgcgctggggcgtcacgcctgcgcaactg
gtctggctcgacataccgccagccgcagcttatgcacaggcgcaggacctgctggtacgg
cttgaggcacttagctatcagccgggacaactgccagccctgatgccccacggtcaggcg
atggccgagctgcccgcccatccgcgcatcgcgcacttgctgctgcgcggccatgcgttg
ggcctgggcgagctggcctgtgacgtggccgcgctattgggcgagcgcgatatcctgcgc
ggcggcggtgcggatctgcatagccgcctgaccttgctggcgggcagcgagcgtgctgcg
cgtggcgcacaaggcggcgtgcagagagccaagcagcttgcgcggcaatatcgaggatac
ctgcgcggcgcagcaaacagcccggtcagcgatcctgaccatccacgctggctgggtgct
ctactggcgctggcttatccggatcgcgtggcgcaacaacgtcgcgctggcggcgctgaa
tatcggttggctaatggtcgtgcggctctgttcgccgaggccgacgcactgatgaaacag
ccgtggctggtcatcgcagacctcggcagccgccaaggccagcgcgaagaacgcatctac
ctcgccgccgagtttgatccggcattgttcgactccgtgttggccgagcaggtcattacc
ttggaccagatcgactgggacgagcgcgaaggcgtgtttcgcgcagagcgacagcgcaaa
gctggcgaactgatcatcagccgcgaaccactgatcggactcgacgaggcagcccgcagc
catgcgttgttggcgctggtgcgtcgcaaaggtctggaactgctgccctggacgccggaa
ctgcgtcagtggcaagcgcgtgtcgcgctgctgcgcaacctcgatgtcgacaaaaacgca
acaagcgaatggcccgacctgagcgacgcacaactgctggccacactcgaaaactggctg
atgccctatctgggtaaagtcacccgactcagccatttcggccagctcgacctgtcatcc
atcctgcgcaacctcctgccgtggcctctcccgcaacaactcgaagcgcaggccccgcag
accatccaggtgccgtccggctcgaatatccgtatcgactacaacgaacagccgcctgtt
ctctcggtgcggctgcaggagttatttgggttatccgatacgccacgcatcgctagcggg
cggcaggtgctgaagctgcatttgttatccccggcgcgtcgtcccgtgcaggttactcag
gatctggctaacttctggcggtcgacctatatcgatgtgaaaaaggatttgaaagggcgg
tatccgaagctatcacgcaacgttcatcaattggcatatgcgtga
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