Pseudomonas coronafaciens pv. oryzae: POR16_07195
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Entry
POR16_07195 CDS
T08147
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POR16_07195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcof03019
]
POR16_07195
03009 Ribosome biogenesis [BR:
pcof03009
]
POR16_07195
Enzymes [BR:
pcof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
POR16_07195
Messenger RNA biogenesis [BR:
pcof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
POR16_07195
Ribosome biogenesis [BR:
pcof03009
]
Prokaryotic type
rRNA helicases
POR16_07195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QGL56142
LinkDB
All DBs
Position
1602003..1603682
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AA seq
559 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERDRPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAE
GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaacttcatccaaatatcgttgcagct
gtcgtcgccactggctacgaagagccttcggccatccagcagcaatcgatcccgattatt
ctcgccggtcacgacatgatcggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gcactgcctatcctgcaccggatcgacccgagcaagcgcgagccgcaagcacttatcctg
gccccgacccgcgagctggcacttcaggttgccaccgcgttcgagacctacgcaaaacaa
atgccgggcgtgaccgttgtagcggtctacggcggcgcgcctatgggccctcagctcaag
gccatccgcaatggcgcacagatcgtcgtcgccactccgggccgtctctgcgaccacctg
cgtcgtgacgagaaagtcctggcgaccgtgaaccatctggttctcgacgaagcggacgaa
atgctcaagctgggcttcatggacgacctcgaagtcatcttcaaggccatgcctgaaacc
cgccagaccgtcctgttctcggccaccttgccgcaatctattcgtgccatcgccgaacgc
cacctgcgtgacccgaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctcggctgtattgagcttgctg
gaagtcgaagacttcgacgccctgatcatgttcgtccgcaccaagcaggcgaccctggac
ctggcaagcgcccttgaagccaaaggctacaaggctgctgcactgaacggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgaatccctcaaggatggccgtctggacatcgttgtt
gcgaccgacgttgccgcccgtggtcttgacgttcctcgtatcacccacgtattcaacgtg
gacatgccttacgatcctgagtcctacgttcaccgtatcggccgtaccggtcgtgcaggt
cgcgaaggtcgtgcactgttgctggtgactcctcgcgagcgccgcatgctgcaggtgatc
gagcgtgttaccggtcagaaggttgcggaagtccgcctgccggatgcccaggccgttctg
gatgctcgcatcaagaaactgaccaacagcctgtcgccgctggttgccgatgccgaatcg
actcatggcgatctgctggatcgtctgactgccgacatcggttgcagcccgcgtgccctc
gctgctgcactgctgcgcaaggctaccaacggtcaggctcttaccctggcagccatcgag
cgtgaccgtccgctggttccgaacaacgcccctcgcggtgatcgtccagaacgcagcggc
agcagcgaccgtggtgatcgtccagagcgcgagcgtcgtgcgcctgttccattggccgaa
ggtcgtgcacgttgccgtaccgcgctgggtgcgcgtgatggcatcgctgccaagaacctg
ctgggcgccatcctcaacgaaggcggcctggcccgcgaagccatcggccgtatccaggtt
cgtgacagcttcagcttggtagaactgccggaagatggtcttgagcgtctgttgactaag
ctcaaggacacccgcgttgccggcaagcagctcaaactgcgtcgctatcgcgaagactga
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