Pseudomonas coronafaciens pv. oryzae: POR16_08975
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Entry
POR16_08975 CDS
T08147
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
POR16_08975 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_08975 (uvrB)
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
POR16_08975 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
POR16_08975 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
HAMP
Cauli_AT
Motif
Other DBs
NCBI-ProteinID:
QGL56470
LinkDB
All DBs
Position
2007194..2009209
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQIKRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY
TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLVEAMENIKVELQERLEYLRSQNKLVEAQRLEQRTRFDLEMMLELG
YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHAGRVVEQVVRPTGLVDPQ
IEIRPALTQVDDLLSEIHKRAALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA
ARNLNGRAILYADRITGSMERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATV
PGSRSKKRKGMAKAAEENGRYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRDE
IGKLRERLLTV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttccagctcgtcacccgttttgagccagccggcgatcagcccgaggccatt
cgccaactggtcgaagggatcgacgcggggctcgcacaccagaccttgctgggggtaacc
ggttcggggaagacgttcagcatcgccaacgtcatttcccagatcaaacggcccacgctg
gtacttgcaccgaacaagactctcgctgcgcagttgtatggcgaattcaaggcgttcttc
cctaacaacgccgtcgaatatttcgtctcctactacgattactaccagcctgaagcctat
gtgccgtcgtcggatacgttcatcgagaaggatgcgtcgatcaacgaccacatcgagcag
atgcgcctgtctgcgaccaaggcgctgctggagcgcaaggacgcgatcatcgtcaccacg
gtgtcgtgcatctacggtctgggcagtccggaaacctacctgcgcatggtcatgcacatt
gatcgcggcgataaactcgaccagcgtgccttgctgcggcgcctggctgatctgcaatac
acccgtaacgacatggactttgcccgcgcgacctttcgcgtgcgtggtgacgtgatcgat
atctacccggccgagtccgatctcgaggcgatccgtgtcgagctgtttgatgacgaagta
gagagtctttcggcattcgatccgctgaccggcgaggtgattcgcaagctgccgcgcttt
accttctatcccaagagccactacgtcacgcctcgagagacgctggtcgaggcgatggaa
aacatcaaggtagagctgcaggaacgcctggaatacctgcgcagccagaacaagctggtg
gaagctcagcgtctggagcagcgcacccgcttcgatctggagatgatgctggaactgggc
tactgcaacggcatcgaaaactactcgcgttacctgtcgggtcgtccgtccggcgcgccg
ccgccgaccttgttcgactacctgcccgccgatgccctgctggtaatcgatgagtctcac
gtcagcgtgccgcaggtcggtgcgatgtacaaaggcgaccgttcgcgcaaggaaaccctc
gtcgagtatggtttccgcctgccatcggcgctggataaccgacccatgcgctttgacgag
tgggaagcaattagcccgcagaccatttttgtctcggcgacaccgggcaattacgaggcg
gaacacgccggccgggttgtcgagcaagtggtgcgtccgaccggtctggtggaccctcag
atcgagattcgtccggcgctgactcaggtcgatgacctgctgtcggaaatccacaagcgt
gcggcgctggaggagcgggtgctggtcaccacgctgaccaagcgcatgtccgaggatctg
accgattacctgagcgaccacggcgtgcgtgtgcgttacctgcactcggacatcgacaca
gtggagcgcgtcgagatcattcgagacttgcgattgggtacgtttgacgtgctggtgggc
atcaacctgctgcgtgagggcctggacatgccggaagtgtcgctggtggccattctcgat
gcagataaggaaggctttctgcgctcggaccgttcgctgattcagaccatcggccgtgca
gcacgtaacctcaatggccgggccattctgtatgccgaccggatcaccggttcgatggag
cgcgccatcggcgaaaccgagcggcgccgagagaagcagatcgcgttcaacctggagcac
ggcattacgcccaaaggcgtgttcaaggacgtcgccgatatcatggaaggcgccaccgtg
ccgggctcgcgcagcaagaagcgcaaaggcatggccaaggccgccgaagaaaacggccgt
tacgagaacgaacttcgctcgccgagcgagataaacaagcgcattcgccaacttgaagaa
aaaatgtaccagctggcccgcgacctggaattcgaagccgctgcacagatgcgcgacgaa
atcggcaagttgcgagagcggttgctgacggtttga
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integrated database retrieval system
