Pseudomonas coronafaciens pv. oryzae: POR16_11035
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Entry
POR16_11035 CDS
T08147
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
POR16_11035 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcof02044
]
POR16_11035 (tssC)
Secretion system [BR:
pcof02044
]
Type VI secretion system
Imp/Vas secretion system core components
POR16_11035 (tssC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
Motif
Other DBs
NCBI-ProteinID:
QGL56851
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Position
2424789..2426264
Genome browser
AA seq
491 aa
AA seq
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MATNVLKKDPVSEFHTGILDQIIAETRLSPGDEAYDIAKRGVAAFIAELLKPTNSIEPVK
KALVDRMITEIDSKLSRQMDEIIHHADFRSLEASWRGLHLLIDRTDFRENIKIELLSVSK
QDLLEDFEDSPEVVQSGLYKHVYTAEYGQFGGNPVGAIIADYFFSPSAPDVKTMQYVSSV
ACMAHAPFIAAAGPDFFGIEQFTGLPDLKDLKDHFEGPQFAKWQSFRQQEDARYIALTVP
RFLLRSPYEPEENPVKTFAYRENVVNAHEHYLWGNTAFAFATKLTDSFAKFRWCPNIIGP
LSGGAVEDLPLHHFHSMGEIETKIPTEVLISDRREYELAEEGFIALTMRKGSDNAAFFSA
SSVQKPKFFGNSPEGKTAELNYKLGTQLPYMMIVNRLAHYLKVLQREQIGAWKERVDLEN
QLNKWIRQYIADQENPSSEVRGRRPLRNAQIIVSDVEGDPGWYRVSLNVRPHFKYMGADF
TLSLIGKMDKE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaacgttttaaagaaggacccggtgagcgaatttcacactggcattcttgac
cagattattgcagaaaccaggttgagcccaggtgatgaggcttatgacattgccaagcgc
ggtgttgctgcgtttatcgcagaactgctgaagcctacgaacagcatcgaaccggtaaaa
aaagcgctggttgatcgaatgattactgaaatcgacagcaagctaagtcgtcagatggat
gaaatcatccaccatgcagactttcgctcgctcgaggcgtcttggcgcggattgcattta
ctgatcgaccgaaccgattttcgtgaaaatataaaaatcgaattgctgagtgtttccaag
caggacttgctggaagacttcgaggactcacctgaagtcgttcagtcggggctttacaaa
cacgtttacactgcagagtacggccagtttggtggtaatcctgtcggcgcaatcatcgcc
gattattttttctcccccagtgccccagacgtcaagacaatgcaatacgtgtcaagcgtc
gcctgcatggcgcatgcgccttttatcgcggcagcaggaccggattttttcgggatcgag
cagtttaccgggttgcctgacctgaaggatctgaaagaccacttcgagggtccgcaattc
gcaaaatggcaaagctttcgacaacaagaggacgcccgttatatcgcgttgacagtaccg
cgtttccttttgcgcagtccgtacgagccagaagaaaaccccgttaaaacgttcgcctat
agagagaacgttgtgaatgctcacgagcattacctgtggggaaacactgcttttgcgttc
gcgacaaaactgacagacagtttcgccaaatttcgttggtgtcccaacattattggtccg
ctgagtggcggcgctgtcgaagatcttccgttgcaccatttccatagcatgggagagatc
gagaccaagattccgactgaggtactgatctctgaccgtcgtgagtacgagctggcagag
gaagggtttatcgcattgaccatgcgcaaaggaagcgacaatgcggccttcttttccgcg
agttcagtacaaaagcctaaattctttggcaatagtccagagggcaaaacggccgagctt
aattacaagctgggcacccaactgccttacatgatgatcgtcaatcggcttgctcattac
ctcaaggtgctccagcgagaacagataggggcctggaaggaacgggtcgatcttgagaat
caactcaataagtggatacgccagtacattgctgaccaagaaaatccgagctccgaagtg
cgtggcagacgccccctgcgcaacgctcagatcatcgtcagcgatgtggaaggcgatccc
ggttggtaccgtgtcagcttgaatgtccgtccgcactttaaatacatgggggctgatttt
acgctgtccctgattgggaaaatggacaaggaataa
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