Pseudomonas coronafaciens pv. oryzae: POR16_12820
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Entry
POR16_12820 CDS
T08147
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcof03032
]
POR16_12820
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_12820
Enzymes [BR:
pcof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
POR16_12820
DNA replication proteins [BR:
pcof03032
]
Prokaryotic type
DNA Topoisomerases
POR16_12820
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
POR16_12820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QGL57164
LinkDB
All DBs
Position
2836656..2837711
Genome browser
AA seq
351 aa
AA seq
DB search
MPDSTAISQPASDLHYVDDTQPGLTRKILRGKFAYFDTKGQRIKDESEIKRINALAIPPA
YTYVWICADPMGHLQATGRDARGRKQYRYHPRWREIRDQDKYSRLIEFGHALPKVRKQIE
AQLAQPGMGREKVMATVISLLDATLIRIGNSQYAKENRSYGLTTLRNKHVEVKGGQILFE
FRGKSGVEHKVSVKDRRLAGVIKRCMELPGQNLFQYLDDDGVRHAVTSSDINTYLQSLTG
SDFTAKDYRTWAASALALATLQKLHWEPEADAKKHIVDMVKAVSKQLGNTPAICRKCYIH
PAVLEGFLLGNLAKLPRSRQKKGMRLEEVALASYLRILADKVEEVVKEGKA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgcctgactcgactgccatcagccagcctgccagtgacctgcattacgtagacgacact
cagcccggccttacccgcaagatactgcgcggtaaatttgcttatttcgacaccaagggc
caacgcatcaaggacgagtcagagatcaagcgcatcaacgctttggcgattccgcccgcc
tacacctatgtgtggatctgcgccgacccgatgggtcacttgcaggccaccggtcgcgac
gctcgagggcgcaaacagtatcgctaccatccacgctggcgggagattcgtgatcaggac
aagtactcacgtctgatcgagttcggccatgcgctgccaaaagtgcgcaagcagattgaa
gcgcaacttgcccagccgggcatgggccgggaaaaagtcatggcaacggtgatttccttg
cttgacgccacgctgattcgcatcggcaacagtcaatacgcgaaggaaaaccgttcttac
ggcctcaccacgttgcgcaacaagcatgtggaggtcaaaggcggccagatcctctttgag
ttccgcggcaagagcggcgtcgagcacaaagtcagcgtgaaagaccggcgtctggccggt
gtcatcaagcgctgcatggaactgccggggcagaacctgttccagtacctggacgacgac
ggggtgcgccatgccgtgacgtcatccgacatcaacacctacctgcaaagcctgaccggt
tccgatttcaccgccaaggactaccggacctgggcggccagtgcgctggcccttgccact
ttgcaaaagctgcattgggagccggaagcggacgccaaaaagcacatcgtggatatggtc
aaagccgtctccaaacaactgggcaatacgccggctatttgtcgcaagtgctacatccac
ccggccgtgctggaaggcttcctgctcggcaacctcgccaaactcccccgctcccgacag
aaaaagggcatgaggctcgaagaagtcgcgctggccagctacttgcgaatccttgcggat
aaagtcgaagaggtagtgaaggaaggcaaagcctga
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