Pseudomonas coronafaciens pv. oryzae: POR16_13080
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Entry
POR16_13080 CDS
T08147
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
POR16_13080
09124 Replication and repair
03420 Nucleotide excision repair
POR16_13080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcof03021
]
POR16_13080
03036 Chromosome and associated proteins [BR:
pcof03036
]
POR16_13080
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_13080
Enzymes [BR:
pcof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
POR16_13080
Transcription machinery [BR:
pcof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
POR16_13080
Chromosome and associated proteins [BR:
pcof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
POR16_13080
DNA repair and recombination proteins [BR:
pcof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
POR16_13080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QGL57207
LinkDB
All DBs
Position
complement(2890241..2892568)
Genome browser
AA seq
775 aa
AA seq
DB search
MTLIAPVHPDPAPAIDDDAPARYVVAVRALCEFTAKAGDLDLRFTPSPTAQEGIAGHRTV
ASRRGADYQAELSLTGDYRELTVRGRADGYDAGRNQLEEVKTYRGELDAMPANHRQLHWT
QVKIYGWLLCQRLQLREVTLALVYFNIVSEQETLIRESFSAATLQAFFEQQCTVFLGWAR
QELAHTRTLHQALGSLTFPHASFRTGQRVLAESVYKAVSTGWCLMAQAPTGIGKTIGTLF
PLLKAAPGQKLDKIFFLTAKTPGRRLALDALGVIKHSAPKLKLRVLELVARDKACEHPDK
ACNGDSCPLARGFYDRLPAARAAALESPWLNQAGVRDAALQHEVCPYYLSQELARWADVV
IADYNYYFDLSAMLFGLSQLNQWRVAVLVDEAHNMVERARQMYSASLDQSQLKTLIQSAP
EPVKKALQRVDRQWSALHKAQPGAYQAYAAAPEKFVNSLNLCISTIGDHFNEHPQAVDGT
LQGFYLEAIGFARIAELFDEHFIFDIARREAGGKRILSRLSLRNVVPARFIRPRLGAARC
TVLFSATLNPRHYYADLLGLPDNTAWIDVESPFHHEQLDVRIVSRISTRFTHRQASLAPI
VELMAEQFESRPGNYLAFFSSFDYLQQVAELMAHTHPHITLWQQARGMGEEERHAFLERF
TLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYD
YTYLYPGVQKVVQAAGRVIRSQSDRGVVMLIDDRFAEPKVKQLFPAWWRPETSIG
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
gtgacccttattgcccctgtacatcccgatccggcacctgccatcgatgacgatgcaccc
gcgcgttatgtggtggccgtgcgcgcgttgtgcgagttcaccgccaaggcgggcgatctc
gacctgcgtttcacgccatcgcctaccgcgcaggaagggattgccgggcatcgcacggtt
gcttcgcgtcgtggtgccgattatcaggccgagctgtcgttgacgggcgactaccgggaa
ctgacggtgaggggcagggcggacggctatgacgcaggtcgcaaccagcttgaagaagtg
aagacctatcgcggcgagctggacgccatgcccgccaaccatcgtcaattacattggacg
caggtgaagatttatggctggctgctgtgtcagcgtctgcagctccgggaggtgacgctg
gcactggtctacttcaatatcgtcagcgaacaggagaccctcattcgcgagtcgttcagc
gccgcgacgctgcaagcgttttttgaacagcagtgcacggtctttctgggctgggctcgg
caagaactggcgcatacccgaacgcttcatcaggcgcttggtagcctgacgttccctcat
gcctcgtttcgtaccgggcagagggtgctggccgagtcggtgtacaaggcggtcagcacc
ggctggtgcctgatggctcaggcaccgaccggcatcggcaagaccatcggcacgctgttc
ccgctgctcaaggcagcgccgggccagaagctcgacaagattttcttcctgacggccaag
acccctggacgtcgcctggcgctggatgcactgggggtcatcaagcacagtgcgcccaaa
ctgaaattgcgcgtgctggaactggtggcgcgggacaaggcgtgcgaacaccccgacaag
gcctgcaacggggattcctgcccactggcccgagggttttacgatcgtctgcctgcggcg
cgtgctgctgcgctggaatcgccttggctgaatcaggctggcgttcgcgacgcggccttg
cagcatgaggtgtgtccgtactacttgagtcaggaactggcgcgatgggccgacgtggtc
attgccgattacaactattatttcgacctgagcgcaatgctgttcgggttgagtcagctc
aatcagtggcgggtggcggtgctggtcgacgaggcgcataacatggtcgagcgcgcgcgg
cagatgtacagcgccagtctggatcaaagccagttgaagacgttgatccagagcgcaccc
gaacccgtgaaaaaagcgttgcagcgcgtggatcggcaatggagtgccctgcacaaggcc
cagcccggtgcctatcaggcttatgcggctgcaccggaaaagttcgtcaacagcctgaat
ctgtgtatttcgaccatcggtgatcatttcaacgagcacccgcaggcggtggatggcacg
ttgcagggcttttatctggaagccatcggctttgcgcgcattgccgagctgttcgacgaa
cacttcattttcgacatcgcccggcgcgaggcgggcggcaagcgcatcctgtcgcgtctg
agcctgcgcaatgtggtgccggcacgtttcattcgtccgcgcctgggcgctgcgcgctgc
accgtgttgttctccgcaacgctcaacccgcggcattactatgccgatctgctcgggctg
ccggacaacacggcgtggatcgatgtggagtcgccgtttcatcacgagcaacttgatgtg
cgtatcgtcagtcgtatttcaacgcgtttcactcatcgtcaggcgtcgctggcgccgatt
gtggaactgatggccgagcagttcgaatccaggccaggcaattatctggcgttcttcagc
agctttgattacctgcaacaggttgcagaactgatggcgcatactcatccgcacatcacc
ctctggcaacaggcccggggaatgggcgaggaggagcgccacgcgtttctcgagcgtttc
accttgagcagtcaggggatcggttttgcagtgctgggcggcgctttcggcgaaggtatc
gacttgccgggtgcacgcttgatcggcgccttcatcgctacgctcgggctgccgcagctc
aacccggtcaatgaacagttcaaacagcgcatggccgcactgttcggtgctggctatgac
tacacctatctttaccccggtgtgcaaaaggtcgtgcaggcagctgggcgggtgattcgc
agccagagtgatcgtggcgtcgtgatgctgatcgatgatcggttcgccgagcccaaggtg
aaacagctgtttccggcgtggtggcgtcctgaaacgtcaatcggttag
DBGET
integrated database retrieval system
