Pseudomonas coronafaciens pv. oryzae: POR16_16045
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Entry
POR16_16045 CDS
T08147
Name
(GenBank) GAF domain-containing protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcof03000
]
POR16_16045
Transcription factors [BR:
pcof03000
]
Prokaryotic type
Helix-turn-helix
Other families
POR16_16045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
HTH_7
AAA_5
HTH_23
Mg_chelatase
AAA_2
nSTAND6
HTH_22
HTH_11
HTH_20
HTH_3
HTH_10
HTH_17
AAA
MerR
HTH_29
DUF2089
dnstrm_HI1420
Xre-like-HTH
HTH_24
HTH_28
HTH_36
Phage_CP76
PAS_7
TetR_N
HTH_AsnC-type
HTH_psq
HTH_Tnp_1
Motif
Other DBs
NCBI-ProteinID:
QGL57744
LinkDB
All DBs
Position
3599877..3601730
Genome browser
AA seq
617 aa
AA seq
DB search
MSQSSASIAHDIIIQDSWTRCLDFGLSHQTRPSFGQLPGADVSRLLERHHALVQTTHQEV
LPVYENILSNSNCLILLADAQGQLLKSWGTQRFVEPSQTQGFMAGASWSERGTGTNAIGT
ALACEQAIHIEPDEHFLKANRFMTGSASPIFDAERRIIAVLDVSSDSFLPPSHTLGMVKM
MSQSVENRLILDQFRDTHFQLIFNTGLNNLDSQWAGLLIFDESGRILCANRRADNLLGAR
LSGVNIETLFKCPILQLLSETEARPFALHAFGNNRFQCLLKRPSRKPLKLHSVQQAQAPV
APRSLDLEAISLGDAKVEKAVFQALRLQEKDIPLLIHGETGVGKEVFVKALHQAGSRASQ
PLIAVNCAAIPAELVEAELFGYERGAFTGANQKGSIGLIRKADKGTLFLDEVGDMPLSVQ
ARLLRVLQERCVQPLGSSELYPVDVRLISATNRSLREQVLAGHFRQDLYYRISGLSIELP
PLRERTDQQALIQRIWERHREPHQRAGFSRDVLELFERHPWPGNLRQLNSVIQVALALAD
EQPISAEHLPEDFLLDARADEECSDLASTQESAVRLHSTPDLGQLFQAAGGNISQLAKRL
GVSRNTLYKRLREQRIV
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaatccagcgcttcgattgcccacgacatcatcattcaggattcatggacccgc
tgtctggacttcggtctcagccatcagacgcgcccatcgttcggccaactgccgggcgct
gatgtttcacgcctgctggagcgccatcacgcgttggtgcaaaccacccatcaagaggtg
ctgccggtctatgaaaacatcctcagcaactccaactgcctgatcctgctggcagacgcc
caaggtcaattgctcaagtcatggggcactcagcgcttcgtcgagccctcgcagacccaa
gggttcatggctggcgccagctggagcgaacgcggcacgggcaccaacgcgatcggcacc
gcacttgcctgcgagcaggccatccatatagagcctgacgaacactttctaaaagccaat
cgcttcatgactgggtctgcgtcaccgatcttcgatgccgaacgcagaatcattgccgtg
ctggatgtatccagcgacagcttcctgccgccctcgcacacactgggcatggtcaagatg
atgagccagtcagtggaaaaccgtctgatcctcgatcagtttcgcgacacccatttccag
ttgattttcaacaccggcctgaacaatctcgacagtcagtgggcgggcctgctgatcttc
gatgaaagcggccggattctctgtgccaatcgtcgcgctgacaatttgctgggcgccagg
ctgtcaggggtcaatatcgaaacgctgttcaagtgccctattctgcaactgctcagcgaa
acagaagctcggccgttcgcgctgcatgcatttggcaacaatcggtttcaatgtttgctc
aagcgcccatcccgcaagccgctcaaactgcatagcgttcagcaagctcaggcgcctgtt
gcgccaagaagcctggacctcgaggcgatcagcctgggtgatgcaaaagtcgagaaagcc
gtgtttcaagccctgcgcctgcaggaaaaagacatcccgctgctgatccatggcgaaacc
ggggtcggcaaggaagtcttcgtcaaagcgctgcatcaggcaggctcaagggccagccaa
ccgttgatcgccgtcaactgcgcggccattccggctgagttggtcgaggccgagctgttt
ggctacgagcgaggcgcgttcaccggcgccaatcagaaaggcagcatcgggctgattcgc
aaggccgacaaaggcacgctgtttctcgatgaagtcggcgacatgcctctgtcggtgcaa
gcgcgtctgctgcgcgtgttgcaggaacgctgtgttcagccgttgggcagcagcgagttg
tatccggttgacgtcagactgatttctgccaccaatcgcagcctgcgcgaacaggtactg
gcggggcactttcgtcaggatctgtattaccggataagcggcctgagcatcgagctgccg
cccttgcgcgaacgcaccgatcaacaggcgttgatccagcgtatctgggaacgacaccga
gagccgcatcagcgggcgggtttttccagagatgtcctcgagctgtttgagcgccacccc
tggccgggcaacctgcgccagctcaacagcgtgattcaggtagcacttgcgctggcggac
gagcagccgatcagtgccgaacatttgccagaagactttctgcttgatgcacgagcggat
gaagaatgcagtgacctggccagtacccaggaatccgccgtgcgccttcactcgacgcca
gacctcggccaactgtttcaagcggcaggcgggaacatttcacagctggccaaacgtctg
ggagtcagtcgcaatacgctgtacaagcggttgcgtgaacagaggatcgtttag
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