Pseudomonas coronafaciens pv. oryzae: POR16_16185
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Entry
POR16_16185 CDS
T08147
Name
(GenBank) AAA family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_16185
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
POR16_16185
Archaeal homologous recombinant proteins
POR16_16185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
nSTAND3
ABC_tran
MMR_HSR1
AAA_22
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
QGL57767
LinkDB
All DBs
Position
3635215..3638862
Genome browser
AA seq
1215 aa
AA seq
DB search
MKILAIRLKNLASLAGPFELDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR
LSNIGQSKVPDVDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNAT
KKLQASRQILTDLDSEQVLSNQSKREFEQLIENRLGLNFEQFTRAVMLAQSEFSAFLKAD
DKERSELLEKLTNTAIYSQLGRRAYSKSKEAEEALKTLTAQASNIIPLAPEQLVELEQRL
ANAQQQLKAHQAQQRQLELKQQWLIELHRLRDEQLAAQESLTRAQQSWDERSAERQTLSQ
LERLGPQRHRFARRLTLNALLTPLAEQIRQFQAQQTSLQSQQQQLETRRTEAQASLLAAQ
QAHGLAKPLLQQAFDAQNTLNHLAQELAKAADLHQQTGQLCAEGQASLQTLLDQQQQVAQ
RLERIATQLEQSSQLAPLAQAWSAWRDRLKSLTLIANRLRHGQSELPALQQRASDADQQL
TEQRQTLELLYREADCEVDAVTEQVQILGSLLQDNRKQQRAFEVLARLWASQQEVDHQFA
ELAQQQLGAQQQREQLNTEGIRVRDELTVAEQTLSVTRQLLERQRLARSASVEELRVQLQ
DDQPCPVCGSVEHPWHQPEALLQSLTHHDDNEQASAQKAVDLLTEQRNHLREQVGGVIAR
QKELLRQHEQLTLRHQALMPDLEAHPLAAQLLDRDPDKRDDWLSQQLRQLNDVIARDEQR
QEALLTLQKDAARLQQQLQTAAEASQTAAHHVAEQLKQLDVDQQRLEEELTAFTPLVSPQ
VLEGLRNDASATVMQLEQQVTQRLDQLEQQNEEQQEQRERQQKIEKEQIEQQARLQRQTE
LALDVIRLGEQRQARQQTLADLLGDHATAEQWQQTLENSIEQARQAEASAAQTLQDLHGK
LIQLAAELKSGMHQQQTLQDELAQLDVQIGEWRAQHPQLDDAALDTLLTYDDAHVEQLRQ
QLQSIEKNLEQDKVLLQERDQRLQQHQAQHSDLSDAGQLTAELQGAQEQLAQSEQHCADL
RAELSEDQRRRNANSELQARITEANDEYLRWARLAALIGSAEGDRFRKIAQAYNLDLLVH
HANAQLKQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLAWM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIKV
RRQGNGLSTIEVGST
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttgccattcgcctgaaaaacctcgcgtcgctggcgggtccgttcgaactg
gatttcaccgcagaaccgttggccagtgccggattgttcgccatcaccggccctaccggc
gcgggtaaaagtaccctgctcgacgctttgtgcctggcgctgttcggggccattccgcgg
ctgagcaatatcggccagtccaaggtcccggatgtcgacggcgacatcaccaccagcgac
ccgcgcaccttgctgcgccgtggcaccggcagcgggtatgccgaggtggatttcatcggc
atcgatcagcgccgctaccgcgcccgctgggaaaccaaccgcgcacgcgacaatgcgacc
aagaagctgcaggccagccgccagatactgaccgatctggacagcgagcaggtcctcagc
aaccagagcaagcgtgagttcgaacaactcatcgaaaaccgcttgggcttgaacttcgaa
cagttcacgcgtgccgtcatgcttgcccagagtgagttcagcgcgttcctgaaagcagat
gacaaggaacgcagcgaactgctggaaaagctcaccaacactgcaatctacagccagctc
ggccggcgtgcctacagcaaaagcaaggaagcagaagaagcgctgaaaaccctgaccgcc
caggccagcaacattatcccgctggccccggagcaactggtcgagcttgaacagcgcctt
gccaatgcacagcagcagctcaaggcccatcaagcacaacaacgccagttggaactcaag
cagcagtggctgatcgagctgcaccgcctgcgtgacgaacaactcgcggctcaggaaagc
ctgacccgtgcgcaacagtcctgggacgagcgcagcgctgagcgtcagactctcagccag
ctggaacgcctgggcccacagcgacaccgttttgcccgacgcctgaccctgaacgcccta
ctcaccccgttagctgaacaaattcgacagtttcaggcacagcaaacttctctgcaaagc
cagcaacagcagttggaaacccggcgcaccgaggcccaggccagcctgctggccgcccag
caggcgcacggtttggcaaaaccgctgctgcaacaggcctttgatgcgcagaacaccctg
aaccatctggctcaggaactggccaaggctgccgatttacatcagcaaaccggacaactg
tgcgctgaaggtcaggccagcctgcaaaccttgcttgatcagcagcaacaggtggcacag
cgcctcgagcgtatcgccacgcagctggagcagagcagccaactggccccgctggcgcag
gcgtggagcgcatggcgtgaccgtttgaagtccctgaccctgatcgccaatcggctaagg
catgggcaaagcgaactgcctgccctgcaacaacgtgccagcgacgccgaccaacagttg
accgaacagcgccagacgctggaattgctgtaccgcgaagccgactgtgaagtcgatgcg
gtgaccgagcaggtgcagatcctcggcagcctgttgcaggacaatcgcaaacaacaacgc
gcattcgaagtccttgcgcgtttgtgggccagtcaacaggaagtggaccatcagtttgcc
gagctagctcagcaacagctgggtgcccagcagcaacgcgagcagctcaacaccgagggc
attcgcgttcgcgacgaattgaccgtcgccgaacagaccctcagcgtcacccggcaactg
ctggagcgtcagcgtctggcccgtagcgccagtgtcgaagagttgcgcgtgcaattgcag
gacgaccagccctgcccggtctgcggcagcgtcgaacatccctggcatcagcccgaggcg
ctgctgcaaagccttacccaccatgacgacaacgaacaagccagcgcgcagaaagccgtc
gacctgctgaccgagcaacgtaatcatctgcgcgaacaggtcggcggcgtgatcgcccga
cagaaagagctgctgcgccagcacgagcaactgaccctgcgtcatcaggccctgatgcca
gaccttgaagcgcatccgcttgccgctcaattgctggatcgcgacccggacaaacgagac
gattggctgagccagcaactgagacagttgaacgacgtcatcgcgcgtgacgagcagcgt
caggaggccttgctgaccttgcagaaagacgctgcgcgtttgcagcagcagctccagact
gcggcagaagccagccagacagctgcgcatcatgtcgccgaacaactcaagcaactggac
gtcgaccaacagcgtctggaagaagaattgactgcgttcacgccactggtgtcgccgcag
gtactcgaaggcctgcgcaacgatgcctcggcaacggtcatgcagcttgaacagcaagtg
actcagcggctggaccagttggagcagcagaacgaagagcagcaggaacagcgcgaacgt
cagcagaagatcgagaaagaacagatcgagcaacaggcccgtctgcaacgccagaccgag
ctggcgctggacgtcatccggctcggcgaacagcgccaggcccgtcagcagacacttgcc
gatttactgggcgaccatgccaccgccgagcaatggcagcagaccctggaaaacagcatc
gagcaggcacgtcaagccgaagcatcggccgcccagacgcttcaggatctgcacggtaag
ctgattcaactggccgccgaactcaaatcgggaatgcatcagcagcagaccttgcaggat
gaactggcgcagctcgacgttcagatcggtgaatggcgtgctcagcatccgcaactggac
gacgcggcgctcgacactctgctgacttacgatgacgcacatgtcgaacaactgcgtcag
caattgcagagcatcgaaaagaatctggaacaggataaggtcttgctccaggagcgggat
cagcgcctgcaacagcatcaggcccagcacagcgacttgagcgacgccgggcaactgacc
gccgagctgcaaggggctcaggagcaactggcacaaagtgaacagcattgtgcggacctg
cgcgccgaactcagtgaagatcagcgccggagaaacgccaacagcgagcttcaggcgcgc
atcaccgaagccaacgacgaatacctgcgctgggcacgactggcggcactgatcggctct
gccgaaggcgaccgatttcgcaagatcgctcaggcctacaacctcgatctgctggtccat
catgccaatgcacagctcaagcaactggtgcggcgctaccgcctgaaacgcggcggcagc
atgcttggcctgctggtcatggacaccgagatgggcgacgaactgcgctcggtccactcg
ctctcgggtggggaaaccttcctcgtctcgctggcgctggcgctgggcctggcgtggatg
gcctccagcaccttgcgcatcgaatccctgttcatcgacgaaggcttcggcagcctggac
ccggaatcactgcagttggcaatggacgcgctggacggcttgcaggcacagggccgcaaa
gtcggcgtgatctcccatgtgcaggaaatgcacgaacgtattccggtgcagatcaaggta
cgtcgtcagggcaatgggttgagcacgattgaggtaggcagtacatga
DBGET
integrated database retrieval system
