Pseudomonas coronafaciens pv. oryzae: POR16_16580
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Entry
POR16_16580 CDS
T08147
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POR16_16580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcof03019
]
POR16_16580
03009 Ribosome biogenesis [BR:
pcof03009
]
POR16_16580
Enzymes [BR:
pcof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
POR16_16580
Messenger RNA biogenesis [BR:
pcof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
POR16_16580
Ribosome biogenesis [BR:
pcof03009
]
Prokaryotic type
rRNA processing factors
POR16_16580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QGL57839
LinkDB
All DBs
Position
3719403..3722741
Genome browser
AA seq
1112 aa
AA seq
DB search
MCAERRFRQPGNRRYYMKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKG
RITRIEPSLEAAFVDFGSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEK
EERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGL
IVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDI
GEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPS
GGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDF
IDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRC
NGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR
ARIIILPNDQLETPHFEVQRLRDDSPEAHNSQTSYEIAAAAAEVEEIAPLAAATRTLVRQ
EAAVKTAPARANAPVPVEAVAPAPTPAPVAHEPSLFKGLVKSLVSLFATKEEPVAPVVVE
KPAAEQRPARNEERRNGRQQSRGRNNRRDEERKPREERAPREERAERAPREERAPREERA
PREERAVREPREAREDSAPREERPARTSRERKPREAREDRPVRELREPLDAAPAVDLARE
ERPERAPREERQPRQPREERQPRAEQAAAAASEEEQVLLNDEQANDENQDSNDGSEGDRP
RRRSRGQRRRSNRRERQRDANGNVIEGSDENGNEEGSADLSAGLGFTAAASAASSVISAP
AEADAHQQAERANSTDASTAEPAQQTPAAEAPAVETPAFEQPAAQTTATEAPVADAPAAA
EPVVEAPAVEAPAVIDTPVAQPAPEVEVLPAATEAPAFAAQTEQFEAPHAERVVPFKPTP
EPAPQAPVEAAAHEEVPATESSELPTPVEAPAAEPAFAKEEPVPYAAPQAAAEEQVSAPA
EQEPAIEEQPAARPVSSTGRAPNDPREVRRRKREEEARRAAAASAPVAEAAPFAAEPESV
QPSPATEEAATSHQTAQPHHEANKEDETKPLI
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgccgaacgccgtttccggcagcccggaaaccgacggtactacatgaaaagaatg
ctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagacggccagcgcctc
tacgacctggacatcgagtcaggtgcacgcgagcagaagaaggccaacatctataaaggc
cgaatcactcgcatcgaacccagccttgaggctgcctttgtcgatttcggctctgagcgc
cacggttttctgcccctcaaggaaatctcccgcgagtacttcaagaaagcccctgaaggc
cgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgagaaa
gaagagcgtggcaacaagggcgcagccctgaccaccttcatcagcctggcaggccgttat
ctggtcctgatgccgaacaaccctcgcgccggtggcatctcgcgccgtatcgaaggcgaa
gagcgcaacgaactgcgtgaagccctcaacggcctgatcgcccccgccgacatgggtctg
atcgttcgcactgccggccttggccgcagcagcgaagaaatgcagtgggacctcgattac
ctgctgcaactgtggaccgccatcaaggaagcgtccctcgatcgttcggctcctttcctg
atctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggacatc
ggtgaagtcctgatcgacagcgtcgaagcccaggaagaagccctgaccttcatccgccag
gtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgttccgctgttcaac
cgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtcgaattgccttcc
ggcggctccatcgtcatcgatcctaccgaagccctggtgtccatcgacatcaactcggcg
cgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcggct
gaggaaatcgcccgtcaattgcgtctgcgcgacatcggcggcctgattgtcatcgacttc
atcgacatgacgccggccaagaaccagcgcgccgtggaagaaaaagtccgcgaaagcctg
gaagccgaccgcgcccgcgttcaggtcggtcgcatctcgcgcttcggcctgctggaaatg
tcccgtcagcgcctgcgtccatcgttgggcgaaagcagcggcatcgtttgcccacgctgc
aacggcaccggcatcatccgcgacgtcgaatcgctgtcgctggccatcctgcgcctgatc
gaagaagaagccctgaaagaccgtactgccgaagtacgtgcccaggtgccgatcccggtt
gctgcgttcctgctcaatgaaaaacgcaactcgatcaccaagatcgaattgcgcactcgc
gcacgcatcatcatcctgccgaatgaccagctcgaaaccccgcatttcgaggttcagcgt
ctgcgtgatgacagcccggaagcgcacaacagccagaccagctacgaaatcgccgctgcc
gccgccgaagtggaagagattgccccgctggctgccgcaacccgcaccctggttcgtcag
gaggcagccgtcaagactgctccagcgcgcgccaatgcgccggttccggtagaagccgtt
gcacctgctccgacgcctgcacctgtcgctcacgagccaagcctgttcaagggcctggtg
aaatccctggtcagcctgttcgcgaccaaggaagagcctgttgcaccggtagtagttgaa
aaaccggctgcagaacagcgtccagctcgcaacgaagaacgtcgcaacggtcgtcaacag
agccgtggccgcaacaatcgtcgtgatgaagaacgcaaacctcgtgaagaacgtgctccc
cgcgaggagcgtgccgaacgcgccccgcgtgaagagcgtgcgcctcgcgaagaacgcgca
ccgcgtgaagaacgtgccgtccgcgaacctcgtgaagcccgtgaagactcggcacctcgc
gaagagcgtccggcccgtacttcccgtgagcgcaagccgcgtgaagctcgtgaagaccgc
ccggttcgtgaactgcgcgagcctctggacgcagccccggctgttgatctggcccgcgaa
gaacgtcctgaacgcgctccgcgtgaagagcgtcaaccacgccagcctcgtgaagaacgt
caaccgcgcgccgaacaggccgcggcggctgcatccgaagaagagcaagtactgctcaac
gacgaacaggccaacgacgagaatcaggacagcaacgacggcagtgaaggcgaccgccct
cgccgccgctcccgtggtcagcgtcgtcgcagcaaccgtcgcgagcgtcaacgtgatgcc
aacggcaatgtgatcgaaggctccgacgaaaacggtaacgaagaaggcagcgccgatctg
tcggccggtcttggcttcacagccgccgcctctgccgccagtagcgtgatcagcgctcca
gccgaagccgatgcgcatcagcaggccgagcgcgccaacagcacggacgcatcgactgca
gagcctgcacagcagacccctgccgccgaagcgccggctgttgaaacacctgcatttgaa
cagccagccgcccagacaacagccactgaagcaccggtcgcagatgcgccggcagcagca
gagcctgtcgttgaagccccggccgttgaagcgcctgcggtgatcgacactccggttgcg
caacctgctcctgaagtagaagttctgccagcagcgaccgaagcaccggcttttgcagca
cagaccgagcagttcgaggcaccgcatgcagagcgtgtagtgccgttcaagccaacgcca
gagcctgcgccacaagcgccggtcgaagcagcggctcatgaggaagtgccagccactgaa
tcatccgaactgccaacacctgtcgaagcacctgctgccgagcctgcattcgcgaaagaa
gaacctgtaccttatgccgcgcctcaggccgctgccgaggaacaggtgtctgcacccgca
gagcaggaaccggcgatcgaggaacaaccggcagctcgtccggtcagcagcactggtcgt
gcccccaacgatccgcgtgaagttcgtcgccgcaaacgcgaagaagaagcgcgtcgtgcg
gcggctgcaagcgctccggttgctgaggcagcaccttttgctgcagagccagaatcggtc
cagccttcaccggcaaccgaagaggctgcaaccagccaccaaaccgctcagcctcaccat
gaagccaataaggaagacgagactaaacctctcatctaa
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