Pseudomonas coronafaciens pv. oryzae: POR16_17360
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Entry
POR16_17360 CDS
T08147
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcof03021
]
POR16_17360 (rpoS)
Transcription machinery [BR:
pcof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
POR16_17360 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
KinB_sensor
Motif
Other DBs
NCBI-ProteinID:
QGL57978
LinkDB
All DBs
Position
complement(3876980..3877987)
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AA seq
335 aa
AA seq
DB search
MALGNEAPEFDIDDEVLLMEAGIVLKEASDEKQPPAASGRTKVKQSSSLKQHKYIDYTRA
LDATQLYLNEIGFSPLLSPEEEVYFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGL
SLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKE
LNVYLRAARELTQKLDHEPTPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTEKQREVVIRRFGLRGHESSTLEDVGLE
IGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggctcttggcaacgaagcgccggagtttgacatcgatgatgaagtgctccttatggaa
gccggcattgtcctgaaggaagcgtcagacgagaagcagccacccgctgcctcggggcgt
accaaggtcaagcaatcatcatcgctcaaacaacataaatacattgattacacacgggcg
ctcgacgcaacccagttgtacctcaatgaaatcggtttctcccctctgctgtccccggaa
gaagaagtctattttgcgcgcctgtcgcaaaagggagatccggccgggcgcaaacgcatg
attgaaagcaatctgcggctggtggtcaagattgccaggcgttacgtcaatcgtggcctg
tcacttctcgacctgatcgaggagggcaatctggggttgatccgggctgtcgagaaattc
gaccctgaacgcggctttcgcttttccacctatgccacctggtggattcgtcagaccatc
gaacgggcaatcatgaatcagacccggaccatccggttgccgattcatgtggtcaaggaa
ctcaatgtctatctgcgtgcagccagagagctgactcagaaactggaccacgaaccgacc
cctgaagaaatcgccaacctgctggaaaagccagtgggtgaggtcaagcgcatgctgggc
ttgaatgagcgtgtatcttccgtggatgtgtcgttggggcctgattccgacaagactctg
ctggacaccctgactgacgatcgtcccaccgatccgtgtgagcttctgcaggacgatgat
ctgtcgcagagcatcgatcagtggctgtccgaactcaccgagaagcagcgtgaagtggtt
atccgtcgctttggcctgagggggcatgagagcagcacacttgaagatgtagggcttgag
atcggtctgacacgcgagcgtgtaaggcagatccaggttgaaggactcaagcgcctgcga
gagatccttgaaaagaacggtttgtccagcgaatcgctcttccagtag
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