Pseudomonas coronafaciens pv. oryzae: POR16_17440
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Entry
POR16_17440 CDS
T08147
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03030
DNA replication
pcof03430
Mismatch repair
pcof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
POR16_17440 (dnaE)
03430 Mismatch repair
POR16_17440 (dnaE)
03440 Homologous recombination
POR16_17440 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcof03032
]
POR16_17440 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_17440 (dnaE)
Enzymes [BR:
pcof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
POR16_17440 (dnaE)
DNA replication proteins [BR:
pcof03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
POR16_17440 (dnaE)
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
POR16_17440 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QGL57993
LinkDB
All DBs
Position
complement(3893134..3896655)
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQGSG
IKPICGVDLWLAGRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQRNGQIVIQRQWV
AQASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYIEVQRTNRTNDEEH
LHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDPRRSHNYSDQQYLK
SPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEAPLDIAFIPLDDMPTYQ
LLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIDGCKTNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAI
KGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEP
KAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADADVYASHRKTRE
SSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGLIIALRVM
KNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAIVVVEGEVSNDDFSGGLRLR
AKRVMSIEDARTNLAESLRVTVHADALKGERLRWFGDLCKRHRGACPITVDYTGKDAKAL
LQLGEAWRIDPADSLIQALRDQFGRENVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcttttgttcatctacgcctgcacaccgagtattcgctggtcgacggtctg
gtccgggtcaaaccgttgatcaaggcgctgaccggcatgaacatgcctgccgtggcagtg
actgatcagaacaacatgtgttcgctggtcaaattctacaaggccgcccaaggctccggg
atcaagccgatctgtggtgtcgacctgtggctggcgggcagggatgaggacgctgcgctc
agtcgtatcagcctgctggcgatgaatgctcaaggctaccgcaacctgaccgaactgatc
tcacgcggcttcatcgagggccagcgcaacggtcagatcgtcatccagcgccagtgggtc
gcgcaggccagcgaaggcgttattgcgctttccgcggccaaggaaggcgaaatcggcatg
gcattgctgggcggcaacccaggcgaggcagacgagctgctgcgcgaatggctggaagta
tttcctgaccgcttctatatagaggtgcaacgcaccaaccgcacaaacgacgaagaacat
ttgcacgccgcagtggcgctggccgagcgccacggtgcgccgctggtcgcgaccaacgat
gtgcgctttatcaaacagaccgattttgaggctcacgagactcgcgtgtgcatcggcgaa
ggccgggcgctggacgacccgcgtcgctctcacaattacagcgatcagcagtatctgaaa
agtccggaagaaatggccgagctgttcagtgatttgcctgaggcgctggaaaataccgtc
gagattgccaagcgctgcaacatcgacgtcaagctgggcacccacttcttgcccaacttc
ccgattcccgatggcatgaccatcgacgagtacttccgcaaagtctcgttcgacggtctt
gaagagcgtcttgctgtcctgttgcccaaggacaccaccgaagattacgaagccaggcgc
caggtgtatgtcgaccggctgaatttcgagctggacatcatcatccagatgggcttcccc
ggttacttcctcatcgttatggacttcatccagtgggccaagagcaacggcgtaccggta
ggtcccggtcggggttcgggtgccggctcgctggtcgcctatgtacagaagatcaccgat
ctcgatccgctggaatatgacctgctgttcgaacgcttcctgaacccggagcgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggtcgtgatcgggtgattgaatatgtg
gccgagaaatacggccgcaatgcagtcagtcagatcatcaccttcggttccatggctgcc
aaggcggtggtgcgtgacgttgcgcgggtacagggcaagtcttacgggctggctgatcga
ctgtcgaagatgatcccgttcgaagtcggcatgaccctagaaaaggcttacgagcaggaa
gaaatccttcgcgatttcctcaaggtagacgaggaagccgctgaaatctgggaaatggcc
ctcaagctcgaaggcatcgtgcgtaacgtgggcaagcacgctggtggtgtggttatcgcc
cccaccaagctgacggacttctcgccgatctattgcgacgaagccggcgacggcctggtg
acccagttcgacaaggacgatgtcgaggccgcagggctggtgaagttcgacttcctcggt
ctgcgaaccctgacgatcatcgactgggcgctgaagaccatcaaccgcgaccgcgccaag
gtcaacgaagcgcctttggacatcgcgttcattccgctcgatgacatgccgacttaccag
ttgctgcaacgggctgaaaccacggcggtcttccagctcgagtcgcgcggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggcgttattc
cgccccggccctttgcagtcgggcatggtagacgacttcatcaaccgcaagcacggccgt
gcagagctgtcttatccgcacgtcgattaccagtacgagggcctcaagcccgtgctggca
cctacttacggcatcattctgtatcaggagcaggtgatgcagatcgcgcaggttatggcc
ggttacaccctcggcggtgcggacatgctgcggcgagcgatgggcaagaaaaagcccgag
gaaatggccaagcagcggggcggtttcattgatggctgcaagaccaacaatatcgacgcg
gatctggccggtaacattttcgacctggttgagaaattcgcgggctacggcttcaacaaa
tcccattcggcggcctatgggctggtgtcgtatcagactgcctggctgaagactcactac
cctgcgccgttcatggcggcggttttatcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcgcaccatgaaactgcgcctcgacgcaccggacgtgaacacc
tccgagttcaagttcacggtaagcgacgacggccgcattctgtatggcctcggcgctatc
aagggcgtgggcgagggcccggtcgaggccattaccgatgcgcgccagaacgggccgttc
aaggatctgttcgatttctgcgcgcgcgttgacctcaaacgggtcaacaagagaacgctc
gacggcttgattcgcagtggtgcgctggatcgcctcggcccgtacttcgaattggaaccc
aaggcgtatcaagccaatatcgaccgtaaccgttcggtgttgctggcagcgctggaagag
gccattcaggctgccgagcagaccgcccgcagccgcgacagtggccactcggacctgttt
ggcggcctgtttgtcgaggcggatgccgacgtatacgccagccatcgcaagacccgcgag
tcgagcctcaaggatcgtctgcggggtgaaaaggaaaccctggggctgtacctgaccggg
catcccatcgacgaatatgaaggcgagattcgccgcttcgcccgtcagcggatcattgac
ctgaaaccggccagggacacccagacggtcgcgggtctgatcattgccttgcgcgtgatg
aagaacaagaagggcgacaagatggggttcatcaccctggatgaccgctcggcacgcatc
gaagcgtcgctgtttgccgaagcgtttcattcggcccagtcactgttgcagaccgatgct
attgttgtggtcgaaggagaagtgagcaacgatgatttctctggagggctgcgactgcgc
gccaaacgtgtgatgagtatcgaggatgcacgtaccaacctggccgaaagccttcgcgtg
acggtgcacgccgacgcgctcaagggtgaacggctgcgctggttcggtgatctttgcaag
cgccatcgaggtgcctgcccgatcactgtggattacaccgggaaggacgccaaagcactg
ctgcaattgggagaagcgtggcgtattgatcctgcggacagcttgattcaagctctgcgt
gaccagttcgggcgtgagaacgtctttctccagtatcgttga
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