Pseudomonas coronafaciens pv. oryzae: POR16_18890
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Entry
POR16_18890 CDS
T08147
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POR16_18890 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcof03019
]
POR16_18890 (rhlB)
Enzymes [BR:
pcof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
POR16_18890 (rhlB)
Messenger RNA biogenesis [BR:
pcof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
POR16_18890 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QGL58262
LinkDB
All DBs
Position
4216265..4217719
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AA seq
484 aa
AA seq
DB search
MLKALKKMFGKSDAEQRAPIPTASIPASPSPDKGAPPDHAVQTQALDTVAEHSKVTAPRA
DKPRAERPRRERVTKPPAPEWKLEDFAVEPQEGKTRFHDFNLAPELMHAIQDLGFPYCTP
IQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTR
ELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQRGE
VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWT
TEPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIE
ERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL
PEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRSVV
RNNA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcacttaaaaagatgttcggtaagagtgacgctgagcaacgcgcgcctata
ccgacagcctccatccctgcttccccttcgcctgacaagggcgccccaccggatcatgct
gtccagactcaggctctggacaccgtcgccgagcactccaaagtcacagcgccgcgtgcc
gacaagccaagggccgagcgcccacgtcgcgaacgtgtgaccaagccgcctgcgccggaa
tggaagctcgaagattttgccgtagaaccgcaggaaggaaaaacccgtttccacgatttc
aacctggctcccgagctgatgcacgctattcaggacctggggtttccgtattgcacgccc
atccaggcaggcgtgctggggttcaccctcaagggcaaggacgcaatcggccgcgcccag
accggcaccggcaagaccgctgcattcctgatctcgatcatcgagcaactgacccagacg
ccaccaccggccgagcgctacatgggtgagccccgcgcgctgatcatcgcgccgacccgc
gaactggtggtgcagatcgccaaggacgccgccgacctgaccaagtacaccaacctgaac
gtcatgaccttcgtcggcggaatggactttgacaagcagctcaagcagcttgaagcgcgc
cactgcgacattctggtagccacacctggccgcctgctggacttcaaccagcgcggcgaa
gtgcatctggacatggtcgaagtgatggtcctcgacgaagccgaccgcatgctggacatg
ggtttcatcccgcaggtacggcagatcattcgccagaccccgcacaagggcgaacgccag
accctgctgttttccgcgacattcaccgaagatgtgatgaacctcgccaaacagtggacc
accgagccttccatcgtcgagatcgagtcgctgaacgttgccagcgataacgtcgagcag
catatctacgccgtggccggtgccgacaaatacaagttgctgtacaacctggtgaccgac
aacggctgggaacgggtcatggtctttgccaatcgcaaggacgaagtacgccgcatcgaa
gaacgcctggtgcgcgacggcgtcaacgctgcgcaattgtcaggcgacgtgccgcagcac
aagcgcatcaagaccctcgaaggcttccgcgaaggcaagattcgcgtgctggtcgccacg
gatgtagcaggtcgaggcatccacatcgatggcatcagccacgtgatcaacttcaccctg
ccggaagtgccggacgattacgtccaccgcataggccgtaccggtcgtgcaggtgccgac
ggcgtctcgatcagctttgccggcgaagacgattcgtatcagctacccgccatcgaggaa
aaactgggccgcaagatcagctgtgaaacaccgccgactcacttgctgaggtccgtggtg
cgcaacaacgcctga
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