Pseudomonas coronafaciens pv. oryzae: POR16_23420
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Entry
POR16_23420 CDS
T08147
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
POR16_23420 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_23420 (mutM)
Enzymes [BR:
pcof01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
POR16_23420 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
POR16_23420 (mutM)
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
POR16_23420 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QGL59069
LinkDB
All DBs
Position
complement(5129894..5130706)
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVIVRDSRLRWPIPEDLDVRLSGQRIVQVDRRAKYL
LIQAEVGTLISHLGMSGNLRLVEAGLPALKHEHVDIELESGLALRYTDPRRFGAMLWSLD
PHNHELLIRLGPEPLTDLFDGERLYERSRGKSIAVKPFVMDNAVVVGVGNIYATEALFAA
GIDPRREAGGISRARYLKLAIEIKRILAYAIERGGTTLRDFIGGDGKPGYFQQELFVYGR
GGLPCKVCGTLLREIKLGQRASVYCPKCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagtcgaaaccacccgccgcggcattgcgccgcatcttgaaggg
cagcgcgtcagccgtgtgatcgtacgcgacagccgtttgcgctggcccatccccgaagat
ctggacgtccgcctgtccgggcagcgcatcgtgcaggtggatcggcgcgccaagtacctg
ctgatccaggccgaagtgggtacgttgataagtcacctgggcatgtcaggcaacctgcgt
ctggtcgaagccggccttcctgcgctcaagcacgagcatgtcgatatcgagctggagtcc
gggctggcattgcgctacacagacccgcgtcggttcggcgccatgctctggagccttgat
ccacataaccacgaattgctgattcgcctcggaccggagccactgacggatctgttcgac
ggcgagcgcctttacgagcgctcgcgtggcaagtcgatcgcggtcaaaccgtttgtcatg
gacaacgcggttgtggttggggtggggaatatctatgcgaccgaagcactgttcgcggcg
ggcatcgatccgcgccgcgaagccgggggtatctcccgggcgcgttatctgaagctggcg
atagagatcaagcgcattctggcctacgccatcgagcgtggcggcacgactttgcgcgac
ttcatcggcggcgatggcaagccagggtattttcagcaggaactgtttgtctacgggcgt
ggcggtctgccgtgcaaggtctgcggcacattgttgcgcgagatcaagctgggtcagcgt
gccagcgtctactgcccgaagtgtcaacgctga
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