Pseudomonas coronafaciens pv. oryzae: POR16_23630
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Entry
POR16_23630 CDS
T08147
Name
(GenBank) type IV secretion protein Rhs
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
PAAR_motif
RHS
TEN_YD-shell
Endonuclea_NS_2
DUF4595
Motif
Other DBs
NCBI-ProteinID:
QGL59110
LinkDB
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Position
5176425..5180651
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AA seq
1408 aa
AA seq
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MFEAARLMDEIEHTGALTGFVLGAVVGIAAVAYVSFAFATCGLGAILLGLAVGLAGNALA
SIGESIGSAFSSPAGQIDSASPNVFINGRPAAFAIESTAVCDKHSPIVKVAEGSSNVFIN
GQPAARKGDKLTCGAKIGTGSPNVFIGGGTHRYLAVHDEVPTIVRYTVDILMVVAGGAKA
VGSIAKLGLQAGLKAAGPCALRFMGGVFLSDAIVRFGVAPLAEKVLGGLHGNPVDSTTGR
KLLIDESDFSLPGLMPIEWTRFYASDLNVDSVLGKGWVLPWEQSLRCKGSFLYVSDNQGR
SVPFVTLGYNERIYNAQEQLYLVRTVGGHYLLQTLDNIFYYFGEVPDDNQPVPLQRIENA
LGHFLHFVRSEDGVLTDICSTGGQRIHLHYDEVTNRLSTVKRIVGDQAVETLVRYGYDKN
GQLNSVYNRNGDSVRNFSYTDGLMNRHANALGLACEYRWEVIGDKPRVVEHWTSDGEHFH
FDYDLVAHQTRVTDVLGRHAEVTYNKDRHVVASTDFGGEHYHIALDDTGNITGLTLPDGN
QLGFEYDELSRLTAETDPLGRTTRYRHHYKTTLVKQVTYPDGAIWKAHYDDRGNLVAEID
ALGHKTEYLNGEDGLPHTIIDATHKSKNLWWNNLAQVERFQDCSGKSTYYRYDAHQQLVA
VTDALNNTTTLERKPGGEVLRIHHPDGSHESFTYNAHGQVLTHTNGKDQTTHLARNARGL
PIRRQDPKGLMVAYQYDEALRLVALTNENDATYTFAYDSADRLIEEKRIDQLTRRFRYNL
GGHLTQVEETGYSEKGERPQRSTWFERDSIGRLLARLNDDARQDFEYDDSDRLRSIQRTP
TDGGRKLGVAAEKLEFAYDILGRLTQETSPQGALDYEYDPLGNLTTLTLPTGQHLNHLYY
GSGHLHQLNLDGQLISDIERDDLHREIYRTQGKLTSCFGYDALGRKAWQYATTLPAEKLS
QIQNPLIKPERYVEHAYNSIHRRYEYDLAGELSRTLDKLRGEVSYEYEANGRLLEHNPEK
RFEGEAFRYDAAGNRLNFNTSRFDRVKDNRLKQWSNHEYTYDAWGNLVEKIVGIVRWQTF
TYDCENRLVKTETMANSQIESTSSYQYDSLGRRVAKHSDIKGQTDQKRFLWQGLRMLREE
SPEQSSLYLYEPGSYAPLARVDQREGEAENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYK
PWGMIEKLVVNEVEQNLRFQGQYFDVETGLHYNTFRYYDPEIGRFATQDPIGLSGGDNLY
LYAPNPYGWVDPLGWCVNASVTRGPAGQPLRATATITKDDIKKGGTATNASSRSWARSLG
NANDDAGHIIAKLLGGSGGKDGVFPQLSKVNRGLFRNYEKIIAKDVRDNGPVNIDIAFKY
ANGGTRPTDIIYNYYREGVLIDGRVFTN
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaggcagcccggttaatggatgaaatcgagcacaccggtgcgctgaccggcttt
gtgctcggagcagtggtgggcatcgcggcggtggcgtatgtatcgttcgccttcgctaca
tgtggcttgggcgcgattttactgggcctggctgtcggactggcgggtaacgcccttgcc
agtatcggggaaagcataggcagtgccttcagctctccggcggggcagatcgattctgcc
tcgcccaacgtgttcatcaatggtcggccggctgcatttgccatcgaaagcacagctgtg
tgtgacaagcactcgcctatcgtcaaggttgcagaaggctccagcaacgtcttcatcaac
ggtcaaccggcagcgcgcaaaggcgacaaactgacctgcggcgcaaaaatcggcacgggc
tcccccaacgtcttcatcggcggcggcacccatcgctacctggcagtccatgatgaggtg
ccgacgatagtccgctacaccgtggacattctgatggtggtggcaggcggcgctaaagcg
gtcggcagcattgccaagctgggcctgcaggccggcctgaaagctgcagggccttgcgca
ctgcgctttatgggcggtgtctttctcagcgacgcaatcgttcgtttcggcgtcgccccg
ctggccgaaaaagtgctgggaggcctgcacggcaacccggtcgactccaccaccgggcgc
aaactgctgatcgatgagtccgacttcagcctgccgggccttatgcccatcgagtggacg
cgcttctacgccagcgacctcaacgtcgacagcgtgctgggcaagggctgggtgctgccc
tgggaacaaagcctgcgctgcaagggcagtttcctgtacgtcagcgacaatcagggacgc
agcgtgccgtttgtgacactgggctacaacgagcgcatctacaacgcacaggaacaactg
tatctggtacgcactgtcggcggtcattacctgttacaaacgctggacaacatcttctat
tacttcggcgaagtccccgacgacaaccagcccgttcccctgcaacgcatcgaaaacgca
ctgggtcattttctgcattttgtgcgcagcgaagacggcgttctgaccgatatctgctct
accggcgggcagcgcatacacctgcattacgacgaagtgaccaaccgcctgagcaccgtc
aaacgcatcgttggcgatcaggcagtcgaaacgctggtgcgttacggctatgacaaaaac
ggccagttgaacagcgtgtacaaccgcaacggcgattcagtacgcaacttcagttacacc
gacgggctgatgaaccgacacgccaacgcactggggcttgcttgcgagtatcgctgggaa
gttatcggcgacaaaccgcgggtggtcgaacactggaccagcgacggcgagcacttccat
ttcgattacgatctggtggcgcatcagacgcgggtgacggatgtattgggccgccatgcc
gaagtgacctacaacaaggatcgccacgtggtagccagcaccgacttcggtggcgagcac
taccacatcgcgctggacgacaccggcaacatcaccggcctgacattgcccgacggcaac
cagttgggctttgagtacgacgagctgtcgcgcctcaccgcagagaccgacccgctgggc
cgaaccacgcgctatcggcatcactacaagaccacactggtcaaacaggtcacctacccg
gacggggccatctggaaagctcattacgacgacaggggcaaccttgtcgctgaaatcgac
gcattgggccataagaccgaatacctcaacggcgaagacggcctgccgcacaccatcatc
gacgcgacccataaatcaaaaaacctgtggtggaacaatctggcgcaggtcgaacgcttt
caggactgttcaggcaagagcacgtattaccggtatgacgcgcaccagcaactggtcgct
gtcacggatgccctgaacaacacaacaacgctggaacgcaaacccggcggcgaagtgctg
cgcatccaccacccggacggcagccacgaaagctttacctataacgcccacggtcaggta
ctgacgcacaccaatggcaaggatcagaccactcatctggcacgtaacgcacgcggcctg
ccgatccgccgtcaggaccccaagggtctgatggtcgcataccagtacgacgaggccctg
cgcctggtggcactgaccaatgaaaacgatgcaacctacaccttcgcctacgacagcgcc
gaccggctgatcgaagaaaagcgcatcgaccagttgacccggcgtttcagatataacctt
ggcggtcatctgacccaggttgaagaaaccggctacagcgaaaaaggcgaacgaccacaa
cgcagtacctggttcgagcgcgattcgattggccgtctgctggccagactcaacgacgat
gcacgtcaggatttcgagtacgacgacagcgaccgcttgcgctccattcaacgcacgccc
accgatggcggcagaaaactcggggtcgcagctgaaaaactggaatttgcctacgacata
ctgggccgcctgacgcaggaaacctcaccgcagggtgcgttggactacgagtacgacccg
ctcggcaacctgaccacgctgacacttccgaccggtcaacacctgaaccacctgtattac
ggaagcggccacctgcaccaactgaacctcgacggccaactgatcagcgacatcgagcgc
gacgacctgcaccgcgagatctaccgcacccaaggcaaactcaccagttgctttggctac
gacgcattaggtcgcaaggcctggcagtacgcgaccactctgcccgccgaaaaactgtcg
cagatccagaacccgctcataaagccagagcgctacgtcgaacacgcctacaactcaatc
caccgccgttacgaatatgacctggctggcgagctaagccgcaccctcgacaagctgcgc
ggcgaagtcagctatgaatacgaagctaacggccgactgctcgagcacaaccccgaaaaa
cgtttcgagggcgaagcattccgctatgacgctgccggcaaccgcctgaacttcaacacc
agccgcttcgaccgcgtcaaagacaaccggctcaagcagtggagcaaccacgaatacaca
tacgacgcctggggcaacctggtcgagaaaatcgtcggcatcgtgcgttggcagaccttc
acctacgactgcgaaaaccgtctggtcaaaaccgagaccatggccaacagccagatagaa
agcaccagcagctaccagtacgacagcctgggtcgacgcgtcgccaaacactcagacatc
aaaggccagaccgaccagaaacgctttctctggcaggggctgcgcatgctgcgcgaagaa
agcccggagcagagcagcctttacctctatgagcctggcagctacgcgccgctggcccgc
gtcgatcaacgcgaaggcgaggcagaaaacaaggtttactacttccacaccgaccagatc
ggcaccccgctggagatgaccgatgccgaagggcagatcgtctggcaggccaaatacaag
ccgtgggggatgatcgagaagctggtggtgaacgaggtcgagcagaacctgaggtttcag
ggtcagtatttcgatgtcgagacagggcttcactacaatacatttcggtattacgatcca
gagatcggccggtttgcaacgcaagatccgattgggctgagtggtggggataatctctac
ctgtatgcgcctaacccttatgggtgggttgatccgttaggctggtgcgtcaacgcgagt
gttacgcgaggacctgcaggacagccgttgcgagcgacggccacaattactaaggatgac
atcaaaaaaggcggtactgctacaaacgcttcatcacgaagctgggcgagaagccttggt
aatgcaaatgatgatgctgggcacataatcgctaagcttctaggcggctcgggaggcaag
gacggggtgtttccgcagttatcaaaagttaaccgagggctgtttcgtaactatgaaaaa
atcatcgctaaagatgtacgagacaacggaccagtcaatatagacatagctttcaaatat
gctaatggcggaacacgaccaactgacattatttataactattatagagaaggggtatta
atcgatggacgagtattcacaaactaa
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