Pseudomonas coronafaciens pv. oryzae: POR16_24515
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Entry
POR16_24515 CDS
T08147
Name
(GenBank) type IV secretion protein Rhs
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
PAAR_motif
TEN_YD-shell
DUF4595
Motif
Other DBs
NCBI-ProteinID:
QGL59273
LinkDB
All DBs
Position
5373805..5377983
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AA seq
1392 aa
AA seq
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MFEAARLHDGIEHTGALGGLLAGAVIGIAMAVAGAALLVCTAGLGAILLGVVLSVGAGAA
PAIGESLGTARTTPAGDIMQTGCSPNVFINGRNAALATQSTAKCENHPAPILIADGSANV
FINGHPAARKGDKVTCGAKIGTGSDNVFIGGGTKRYLKVNEEVPEALRVGVDIAIIVASM
GRAGLPMLAKGLAGGLKAVAPCALGFAATVAGSYLFGHYVAGPVISGVIGGYSGNPVDLT
SGRKLLFESDETDFALPGLMPIEWSRFYASDLNVDGVLGKGWVLPWEQSLRRNGSFVYLI
DNQGRSVPFVNVEPGQSIYNPYEQMHLVRTQGGHYLLQTRDNIFFYFGEVPNDNKPVPLQ
RIENALGHYLHFSRTKEGTLTDISAPGDVHVHLQYEHPLGRLTSVKRIVDREAVETLARY
HYDDNGQLSDVYNRNGDSIRSFSYTDGLMTRHSNALGLNCYYRWETIDDEPRVVEHWTSD
GEHFHYRYDFKQRTSWAVDVLGRELEVHYNEDRRVTSGRDYGGEHYTIDIDESGNITGLV
LPDDNTLTFKYDHLSRLVEETDPLGRKITYKHHLATTLVTKTTFPDGSTWENRYDSRGNL
LIEIDALGQKTEYLNSEDGLPHTIIDATYKSKYMWWNSLAQVVRFQDCSGKDTYYRYDDR
GHLIAVSDALNNTTTLERKPDGEVLRIAHPDGSVESFTYNALGQVLSHTDGKGQITRLSR
NARGLPTRREDAKGEAVAYQYDKAIRLTALTNENNATYTFAYDNSDRLIEEKRIDNLTRR
FSYNLGGHLTQVEEIGYGEKGEQPRRSTHLERDPIGRLLAKLNDDARQDYAYDDGDRLLS
IERKPTDTGRKLGVSAEKLEFAYDLLGRLVKETTPQGALAYEYDPLSNLTTLTLPTGQHL
NHLYYGSGHLHQLNLDGQLISDMERDDLHREIYRTQGTLTSCFGYDSMGRKAWQYATTLP
AEKLSQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETRYEYEANGQLLA
RNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLKQWANQEYKYDAWGNLIEKTVGIV
RWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVGKQSEIKGQTEHKHFLWQGLR
MLREESPGQNSLYLYEPGSYAPLARVDQKEGEAENKVYYYHTDQIGTPLEMTDAEGQIVW
QAKYRAWGAVEKLVVNEIEQNLRFQGQYFDVETGLHYNTFRYYDPEIGRFTTQDPIGLLG
GENLYQYAPNTTGWIDSWGLSCQPTKKYEVGPFDKLQKKSSVGDGLDIHHAAQKHPASQV
IPDYNPKTAPSIALPRAEHKLIPTIKGEFTGTPRSLLAKDVQDLRNYTNTPPSAIRKLID
LNKEMFPEAFLK
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaagccgcacgtttgcacgatggaattgagcacactggcgcactaggtgggctt
ctggctggcgctgtcatcggtatcgcgatggccgtggctggcgcggccctgcttgtctgc
accgcaggactcggtgccattcttctgggcgttgtgttgtcagtcggcgcgggggccgcc
ccggcgataggtgaaagcttgggcacagcgcgaacaacgccggcaggcgatatcatgcag
accggatgttcgcccaacgtctttatcaatggccgtaatgctgctcttgccactcaaagc
accgccaagtgcgaaaatcatcctgcgcctattctcattgcagacggctctgccaacgtt
ttcatcaatggtcatcccgctgcgcgcaagggcgacaaggtcacatgtggtgcaaaaatt
ggcaccgggtccgacaacgtttttattggcggtggcacaaagcgctatttgaaagtcaac
gaggaagtccctgaagcgcttcgcgtcggcgttgatatcgcaatcatcgtcgcctctatg
gggcgtgcgggcttgcctatgctggcaaaggggcttgccggtggcctcaaggcagttgca
ccttgcgctctagggtttgccgccacagtggcggggtcgtatctattcggccactatgta
gctggacctgtaataagcggagttataggtggctacagcggcaaccccgttgacctcacc
agcggtcgcaaattgctgtttgaatcggatgaaaccgactttgccctgccgggacttatg
cccatcgagtggtcgcgcttttacgccagtgacctgaacgttgacggcgtcttgggcaag
ggctgggtattgccgtgggagcagagcctgcgcagaaacggcagtttcgtttacctcatc
gacaatcagggccgtagtgtgcccttcgtcaatgtcgagcccgggcaaagcatttacaac
ccttacgagcagatgcacctggtacgcacgcaaggcggccactacctgctgcagactcgg
gacaacattttcttctactttggggaagtgccgaacgacaacaaacctgtcccgctgcaa
cgcatcgaaaacgcattgggtcattacctgcatttcagccgtaccaaggaaggtactctg
accgacatcagcgcccccggtgatgttcatgtgcatttgcagtacgaacacccgctaggg
cggttgacctcggttaagcggattgtcgatagggaagccgttgaaacgctcgctcgttat
cactatgacgacaacggccaactcagcgacgtctacaaccgcaatggcgattccattcgc
agcttctcctacaccgacggcctgatgacccgccacagtaatgcactgggtctgaactgc
tactaccgttgggaaacgattgatgacgaacctcgcgtggtcgagcactggaccagcgat
ggcgagcatttccattaccggtatgactttaaacagcgcacctcgtgggccgtcgatgtg
ctgggccgtgaactggaagttcattacaacgaagaccgtcgcgtcacttccggccgtgat
tacggtggcgaacactacaccatcgatatagacgaaagcggcaatataacagggctcgta
ctgcccgatgacaatacgctgaccttcaaatacgaccacctctcgcggctggttgaagag
accgacccgctagggcgcaagatcacctacaaacatcatctggcgaccacgctggtgacc
aagacgactttcccagatggcagcacgtgggagaaccgctacgactccagaggcaatctt
ctgatcgagattgacgcactggggcaaaaaaccgagtacctcaacagcgaagatggccta
ccgcacaccattattgatgcgacctacaagtccaaatacatgtggtggaatagcctcgct
caagtcgtgcgcttccaggactgctcaggtaaagatacttactatcgctatgatgaccgc
ggccacctgatcgccgtttcggatgccctgaacaacaccacaacgctagagcgaaaaccc
gacggtgaagtgctacgcatcgcccatccagacggcagcgtagagtccttcacctacaac
gccctcggtcaggtactttcgcataccgatggcaaaggccagatcacccggctgtcccgc
aacgcgcgtggcctgcccacccgacgcgaagacgccaaaggcgaagccgttgcctatcag
tacgacaaggccatccgtctcacagcactgaccaacgaaaacaacgccacctacaccttt
gcctacgacaactccgaccgcctgatcgaagaaaagcgtatcgacaacctcacccgccgt
ttcagctacaaccttggcgggcacctgacacaggtcgaggaaatcggctacggcgagaaa
ggcgaacagccacgccgtagcacccatctggagcgcgatccgattgggcgcctgctggcc
aaactcaacgacgatgcgcgtcaggactacgcatacgatgacggcgaccgactgctgtca
atcgagcgcaagccgacggacaccggcagaaagctcggcgtcagcgctgagaaactggaa
tttgcctacgacctgctaggccgtctcgtcaaagagaccaccccgcagggcgcactggcc
tacgagtacgatccactcagtaacctgaccacgctgacgcttcccaccggccagcacctg
aaccacctgtattacggcagcggtcacctgcaccagttgaaccttgatggccaactgatc
agcgacatggagcgtgacgacctgcaccgcgagatctatcgcacccagggcacgctcacc
agttgcttcggctacgacagcatggggcgcaaggcttggcagtacgccacaaccctgccc
gctgagaaactgtcacagatccagaacccgctcataaagcctgagcgctacgtcgaacat
gcctacaacccgattcaccgccgctacgaatacgacccggcaggcgaactgagccgcacc
ctcgacaaactgcgcggcgaaacccgttacgaatacgaagccaatggccagttgctggcg
cgcaacaccggtcgagtcgtcgatggcgaagaattccgctacgacgctgcggccaaccgc
ctcaacttcaacaccagccgcttcgatcacgtcaaagacaaccgcctcaaacagtgggcg
aaccaggagtacaagtacgacgcctggggcaacctgattgaaaaaaccgtcggcatcgtg
cgctggcaaaccttcacctacgactgcgaaaaccgcttggtcaagaccgagaccatggct
gacacgcaggtggaaagcaccagcagttatcagtacgacagcctgggccgacgcgtaggg
aaacagtccgagatcaaaggccagaccgaacacaaacacttcctctggcaaggcctgcgc
atgctgcgcgaagaaagccccggccagaacagcctgtacctctacgaacctggcagctac
gcgccgctggcccgcgtggatcagaaggaaggcgaagccgagaacaaggtttactactac
cacaccgaccagattggtacgccgctggaaatgacagatgccgaagggcaaatcgtctgg
caggccaagtatcgggcgtggggtgctgttgaaaagctggtcgtgaacgagattgagcag
aacctgaggtttcaggggcagtattttgatgtcgagacggggctgcactacaacacgttt
cggtattatgacccggagattgggcggtttactacgcaggacccgattgggttgttgggt
ggggagaatctttatcagtatgcgcctaacactaccgggtggattgattcgtggggactc
agttgccagccaacaaaaaaatacgaagtaggcccattcgataagttacagaaaaagtcc
tcggtaggtgatggtctagatatccatcacgccgcacaaaagcacccagcaagtcaagtg
attccagattacaatccaaaaacggctccgtcgatagctttgcctagagcagagcataaa
ctaatcccaactattaaaggagagtttaccggcacgccaagaagtttgttggcaaaagac
gttcaggaccttaggaactataccaacacacctccatcagcgattagaaaactcattgat
ctgaataaagagatgttcccagaagccttcctgaagtag
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