Pseudomonas coronafaciens pv. oryzae: POR16_24935
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Entry
POR16_24935 CDS
T08147
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pcof
Pseudomonas coronafaciens pv. oryzae
Pathway
pcof03420
Nucleotide excision repair
pcof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
POR16_24935 (uvrD)
03430 Mismatch repair
POR16_24935 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcof03400
]
POR16_24935 (uvrD)
Enzymes [BR:
pcof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
POR16_24935 (uvrD)
DNA repair and recombination proteins [BR:
pcof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
POR16_24935 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
POR16_24935 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGL59340
LinkDB
All DBs
Position
5464713..5466896
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVL
SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDD
QQRLVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYE
AACQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFPDTEVIRLEQNYRSTASILKAANGLII
NNSGRLGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGISRNDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLH
LMTQTVIEQSGLIAYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHA
SLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPALIQEVRLSNSVNRPFGGTP
KFNSSSLFNGTGIPETEFTMGQRVQHAVFGEGVILNFEGAGAQARVQVNFSEGSKWLMMG
YAKLVPL
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctctcttcttcttaattctctcaacgatgcccaacgtcaggccgta
gccgcctcattgggtcgtcagttggtcctggccggtgcaggctccggcaaaacccgtgtg
ctggtgcatcgcatcgcctggctgatgcaggtcgagcaagcctcgccgcattcggtgctg
tcggtgacgttcaccaacaaggcggctgccgagatgcgtcaccgcatcgaacagctgatg
ggcatcagcccggccggcatgtgggtgggcacctttcacggcctggcacaccgcctgttg
cgtgcgcactggcaggaagccgggctggtgcagaccttccagattctcgacagcgatgac
cagcaacgcttggtcaaacgtgtgatgcgcgagcttggcctggatgagcaacgctggccc
gcgcgtcaggcccagtggttcatcaacggtcagaaagacgagggtctgcgccccaagcac
attcaggccagcggcgaccttttcctgaccaccatgaaaagcgtctacgaagcctacgaa
gccgcctgccagcgggccggcgtcatcgacttctccgaactgctgctgagagcgctcgac
ctgtggcgcgacaatccgggcctgctcgcgcactatcagcgtcgcttccgccacgtattg
gtcgacgaattccaggacaccaacgccgtgcagtacgcctggttgcgtctgctggcccaa
ggtggcgacagcctgatggtggtcggcgacgatgatcagtccatttacggctggcgcggc
gcgaagatcgagaatatccaccaatattcatccgatttcccggacacagaagtcatacgt
ctggagcagaactaccgttccacagcgagcattctcaaggccgccaatggcttgatcatc
aacaacagcggtcgtttgggcaaagagctgtggaccgatgtcggtgatggtgagctgatc
aatctgtacgccgccttcaacgagcacgacgaagcgcgctacgtggtcgagaccattgaa
agcgcattgaaaaccggtatatcgcgcaacgatatcgccattctctaccgctccaacgcc
cagtcgcgagtgctggaagaagcactgctgcgcgagcgcattccataccggatctatggc
ggacagcgcttcttcgaacgcgccgagatcaagaacgcgatggcgtacatgcgcctgctg
gaaggccgcggtaacgatgcggcgctggagcgggtgatcaacgtaccggcgcgcggcatc
ggtgagaaaaccgtcgaagccattcgcgagcatgcgcgtcatgccgacgtttccatgtgg
gaagccatgcgtctgctggtcgccaacaagggcctgaccggccgcgcggccactgcgctg
ggcgggtttatcgaactcatcgagaacctgtccgccaaggtcatggaaatgccgctgcac
ctgatgacccagacggtcatcgaacagtccgggctgatcgcgtatcacgaacaggaaaaa
ggcgagaaaggccaggctcgcgtagaaaaccttgaggaactggtcagcgctgcacgggcc
ttcgagaaccacgagagcgaagaagatctgacaccattggcggccttcctgggccatgcg
tcactggaagctggcgatacgcaggcgcaggaacacgaagacagtattcagttgatgacc
ttgcacagcgccaagggtctggaattcccgcatgtgtttctggtgggcatggaagaaggg
ctgttcccgcacaagatgagcctggaagaaccgggtcgcctggaagaagaacgccgtctg
gcctacgtgggcattacccgcgcgatgaaacagctggtgatgacctacgccgaaacgcgt
cgtctgtacggcagcgagacctacaacaaggtctcgcgattcgtgcgggagattccacct
gcgctgattcaggaagtgcgcttgtccaacagcgtcaaccgtccgttcggtggcacgccg
aagttcaacagcagcagcctgttcaacggcaccggcattccggaaaccgagttcaccatg
ggccagcgtgtgcagcacgcggtgtttggcgaaggcgtgatcctcaacttcgaaggcgca
ggcgctcaggcgcgcgtgcaggtcaacttctccgaaggcagcaagtggctgatgatgggg
tatgcgaagctggtgccgttgtag
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