Segatella copri: LK433_00540
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Entry
LK433_00540 CDS
T07933
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcoi
Segatella copri
Pathway
pcoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LK433_00540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoi03021
]
LK433_00540 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcoi03400
]
LK433_00540 (rpoB)
Enzymes [BR:
pcoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LK433_00540 (rpoB)
Transcription machinery [BR:
pcoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LK433_00540 (rpoB)
DNA repair and recombination proteins [BR:
pcoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LK433_00540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
T4_y05I_C
Motif
Other DBs
NCBI-ProteinID:
UEA43122
LinkDB
All DBs
Position
complement(127938..131750)
Genome browser
AA seq
1270 aa
AA seq
DB search
MATKIVDNRVNFASVHNPYPYPDFLDVQLKSFKDFLQLDTPPEERKNDGLYKVFSENFPI
TDTRNNFVLEFLDYYIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFIQDV
FLGTIPYMTDNGTFVINGAERVVVSQLHRSPGVFFSQGVHANGTMLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGYEQDKDILQIFDLAEEVKVNKKNMKAAIGRK
LAARVLKSWNEDFVDEDTGEVVSIERNEVIMERETELTADNIEEIVESGAQTILLHKDEE
AANKFTIIFNTLAKDPSNSEKEAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGE
VGRYRINKKLNLDTDIDVRVLTKEDIIEIIKYLIQLINSSATVDDIDHLSNRRVRTVGEQ
LANQFSIGLARMTRTIRERMNVRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTN
PLAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCMYA
KINDLGFIVTPYRKVNDSKVDMANEDVVYLTAEDEESKIIGQGNAPLTVDGSFIRDVVKC
RQDADYPVVGPDQVDYVDVSPQQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHND
APIVGTGLEKQVCEDSRTMVTAEGEGVIEYVDATTIRILYDRTEDDEFVSFEPALKEYRI
PKFRRTNQNMTIDLRPICNKGQRVKKGDILTEGYATEKGELALGRNLLVAYIPWKGYNYE
DAVVISERMVRDDVLTSVHVDEYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGIVRV
GARIEPGDIMIGKISPKGESDPSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKL
FSRAIKTRESKKQDKIILAKIDEEYEAKGNDLKDILVDKLLTLTEGMTSEGVKDYTGAEI
ITKGSTFTATALKNLEYDGVQSNKWTKDEHTNGLIQRLIMNYIRKYKQLDAELKRRKFAI
TIGDELPSGILQMAKVYIAKKRKIQVGDKLAGRHGNKGIVSKVVRLEDMPFMADGRPVDM
VLNPLGVPSRMNLGQIFECILGAAGKKLGVKFATPIFDGAKLDDLSEWTDKAGLPRFCST
YLYDGETGEQFDQPATVGMTYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWAIEAFGASHVLQEILTVKSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHEL
RGLGLSIKLD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaaattgttgataacagagtaaattttgccagcgtgcataatccgtatcca
tatccggatttcctcgatgtgcagttaaagtctttcaaggacttcttacagttggatact
ccgcctgaggaacgcaagaatgacggtctgtataaggtgttctctgagaacttccctatt
accgatacacgtaacaatttcgttcttgagttcttggattactatatcgaccctcctcgc
tattctattgatgagtgtttggagcgtggtcttacatatagtgtacctttgaaggctaag
atgaaactgtattgtactgatcctgatcatgaggatttcggtacatttattcaggatgtg
ttccttggtactatcccatatatgaccgataatggtacttttgtgattaacggtgctgag
cgtgttgttgtttctcagcttcatcgctctcctggtgtgttctttagccagggtgttcat
gcaaatggtaccatgctttattctgctcgcatcattcctttcaagggaagctggattgaa
tttgcaactgacattaacaatgtaatgtatgcatatatcgatcgtaagaagaagttgcct
gtaaccacattgttgcgtgctattggttacgaacaggataaggatattcttcagattttt
gatctcgccgaggaggtgaaggttaacaagaagaatatgaaggctgctattggtcgtaaa
cttgctgctcgtgttttgaagagttggaatgaggacttcgttgatgaggatactggtgaa
gtagtatctatcgagcgtaatgaagtaatcatggagcgtgagactgaacttactgctgat
aatattgaggagattgttgagagtggtgcgcagactattcttcttcataaggatgaggaa
gctgccaacaagtttactattatcttcaatactttggcaaaggatccaagtaactctgag
aaggaagctgttaactatatctatcgccagttgcgtaatgctgatcctgcagatgacgca
agtgcacgtgaggttttccaaaacctgttcttctccgataagcgttatgatttgggtgag
gtaggtcgttatcgtatcaataagaaattgaatcttgatactgacattgatgttcgtgtc
ttgactaaggaagatattattgagatcattaaatatcttattcagctgatcaactctagt
gcaacagttgacgatatcgaccacttgtctaatcgtcgtgttcgtacagtaggtgagcag
ttggctaaccagttctctattggtttggcacgtatgacccgtactatccgtgaacgtatg
aatgttcgcgacaatgaggtgtttactccaacagatttgattaatgctaagacaatctct
agtgttatcaattctttctttggaactaacccattgtcacagttcatggaccagactaat
cctctggctgaggtaacccataagcgtcgtctttctgccttaggtcctggtggtttgtct
cgtgagcgtgccggtttcgaggttcgtgatgtacattatacacactatggtcgtctttgc
cctattgagagtcctgaaggtccaaacatcggtttgatttcttctctctgtatgtatgca
aagataaacgatcttggttttattgtaacaccttatcgtaaggtgaatgatagcaaggtc
gatatggctaatgaggatgttgtatacttgactgctgaagatgaagagtctaagattatc
ggtcagggtaatgctcctttaactgttgatggttctttcattcgcgatgtagtaaagtgt
cgtcaggatgcagattatccagttgttggtccagaccaagttgactatgttgacgtttct
ccacagcagattgcttctgtatccgctggtttgattcctttcttggagcatgatgatggt
caccgtgcgttaatgggatgtaatatgatgcgtcaggctgtaccattgcttcataatgat
gctccaatcgtaggtactggtcttgagaagcaagtttgtgaggattcacgtactatggtt
actgcagaaggtgagggtgttattgaatatgttgatgctacaactatccgtatcctttac
gatcgtacagaagacgatgagttcgtaagtttcgaacctgctttgaaggagtatcgtatt
cctaagttccgtcgtacaaaccagaatatgaccatcgacttgcgtcctatctgtaataag
ggacagcgtgtaaagaagggtgatatcctgacagagggttatgcaacagaaaaaggtgag
ttggctttgggtcgtaacctgcttgttgcttatattccttggaagggttacaactatgag
gatgctgttgttatttctgaacgtatggttcgtgatgacgtattgacatctgtacatgtt
gacgaatactctcttgatgtgcgtgaaactaagcgtggcgtagaggaattcacatctgat
atccctaatgtcagcgaggaagctacaaaggatcttgacgataatggtatcgtgcgtgtt
ggcgcaagaattgagccaggtgatatcatgattggtaagatttcgcctaagggtgaaagt
gatccttcaccagaagagaagttgcttcgtgctatctttggtgataaggctggtgatgtg
aaggattcttcattgaaggcaaatccatcattgagcggtgtagttattgacaagaagttg
ttctctcgtgctatcaagacccgtgagtcaaagaagcaggataagattattcttgctaag
attgatgaggagtatgaggcaaagggtaatgatttgaaggatatcctcgtagacaagtta
cttacacttacagaaggtatgacttctgagggtgttaaggattatacaggtgctgagatt
atcaccaagggcagtacctttactgctacagccttgaagaatttggagtatgatggtgtt
cagtctaataagtggactaaggatgagcataccaatggcttgattcagagacttattatg
aactatatccgcaagtataagcaacttgatgctgaattaaagcgccgtaagtttgctatc
actattggtgatgaacttccatcaggtattcttcagatggctaaggtatatattgcaaag
aagcgtaagattcaggttggtgataaacttgccggtcgtcatggtaataagggtattgtg
tctaaggtcgttcgtttggaggatatgccatttatggctgacggtcgtcctgttgatatg
gtattgaacccattgggtgtgccttctcgtatgaaccttggtcagatcttcgagtgtatc
ttgggtgctgcaggtaaaaagttgggtgtaaagtttgctactcctatctttgatggtgct
aaattggatgatctctctgaatggacagataaggcaggcttgccacgtttctgctcaact
tacctttatgatggtgagactggagagcagtttgaccagccagctactgttggtatgact
tacttcttgaagttaggtcatatggttgaggataagatgcacgctcgttctattggtcca
tactctttgattacgcaacagccacttggtggtaaagcacagtttggtggtcagcgattc
ggagagatggaggtctgggctatcgaggcattcggtgcaagccacgttttgcaggagatc
ctgactgttaagtcagatgatgttgtaggacgtagcaaggcatacgaagcaatcgtaaag
ggcgatccaatgccaactcctggtattcctgagtcacttaacgtattgctccatgagctt
cgtggccttggtttgagcatcaaacttgattaa
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integrated database retrieval system
