Segatella copri: LK433_02325
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Entry
LK433_02325 CDS
T07933
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pcoi
Segatella copri
Pathway
pcoi02020
Two-component system
pcoi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcoi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LK433_02325 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LK433_02325 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoi03021
]
LK433_02325 (rpoN)
Transcription machinery [BR:
pcoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LK433_02325 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
Motif
Other DBs
NCBI-ProteinID:
UEA43439
LinkDB
All DBs
Position
568521..570044
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AA seq
507 aa
AA seq
DB search
MAQKLIQTQAQKLQQLQRLSAQQMLQVKLLEMPLTELEDSINAELDDNPALESENPDDML
NENVANDDSPADDEYDNSSDEDAYEAESEKEERKDELDQALESIGKDDQMPDYNTDRYNN
QDSADYEEMVYGDTTSFYDKLKEQMDMQPLSDKEKEVMEYLIGSLDDDGLLRKDLDSICD
ELAIYHNIDVTEKDIEHVLHILQTFDPAGVGGRSLQECLLLQVKRLPRGVLRKTMEEVFT
DYFDEFTKKHWDKIKAGLELNDTQVETLQAEIRKLNPKPGASMGETEGRNMQQITPDFII
DTNDDGTITFSLNRGNIPQLTVSPSFTDMIDTYRKHKDKMSRSDKEALLYAKEKVDKAQG
FIEAIKQRRHTLIVTMKAIIDIQRQFFLDGDEADLKPMILKDVAERTGLDISTISRVSNV
KYAQTKWGTFPLKFFFTDSYTTEDGEEMSTRKIKIALHDIIEKEDKKKPISDDALAKLLK
EKGFPIARRTVAKYREQLGIPVARLRK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaaactcatacagacacaggcacagaagttacagcaacttcaaagactttca
gcccagcaaatgctgcaggtgaaactgttggaaatgccgctcacggaactggaagacagt
atcaatgcagaactggacgataatcccgctctggaaagcgagaacccagacgacatgctc
aacgagaatgtcgccaatgatgattcgcccgcagatgatgagtacgacaacagcagcgat
gaggatgcctacgaggctgaatctgaaaaagaagaaagaaaagacgaactggaccaggca
ctggaaagcatcggaaaagacgaccagatgcctgactacaatacagacagatacaacaac
caggacagcgctgactacgaagaaatggtttacggtgacaccacctctttctatgataag
ctgaaggaacagatggacatgcagccgctcagcgacaaggagaaggaagtaatggaatat
ctcataggttcactggatgacgacggactgctccgcaaggacctggacagcatctgcgat
gaactcgctatctatcacaacatcgatgttacggaaaaagacatcgagcacgtgctccac
attctacagaccttcgacccagccggtgtaggaggaagaagtctgcaggaatgcctcctg
ctgcaggttaagagactgccgagaggtgtgctccgcaagacgatggaagaggtgtttact
gactattttgacgagtttaccaagaaacattgggacaagatcaaggcaggactggaactg
aacgatacacaggtagaaaccctgcaggcagaaatcagaaagctgaacccgaaaccgggc
gcatcgatgggcgaaacagagggaagaaacatgcagcagattacccccgacttcatcatc
gacaccaatgacgacggaacgattacattctcgctgaaccgtggcaacattccgcaactg
acggtttcgccatcattcaccgacatgattgacacctacaggaagcataaagacaagatg
agccggagcgacaaggaagccctgctctacgccaaggaaaaggtggacaaggcacaggga
ttcatcgaagccatcaagcagagaagacataccctcatcgtcaccatgaaggcaattatc
gacatacagcggcagttcttcctggatggagacgaggctgacctgaaaccgatgatcctg
aaggatgtagcagaacgcacgggactggacatcagtaccatctcgagagtgagcaacgtg
aagtatgcccagactaaatggggcaccttcccgctgaagttcttcttcacagacagctac
accactgaagacggcgaagagatgtctacccgcaaaatcaagattgccctgcacgacatc
atcgagaaagaagacaagaaaaagccaatcagcgatgatgcactcgccaaactgctgaag
gagaagggattccctatcgcacgacgtacggtggcaaaatatagggaacaactgggcata
ccggtggcacgactcaggaaataa
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