Segatella copri: LK433_05120
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Entry
LK433_05120 CDS
T07933
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcoi
Segatella copri
Pathway
pcoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK433_05120 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoi03019
]
LK433_05120 (recQ)
03400 DNA repair and recombination proteins [BR:
pcoi03400
]
LK433_05120 (recQ)
Enzymes [BR:
pcoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK433_05120 (recQ)
Messenger RNA biogenesis [BR:
pcoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK433_05120 (recQ)
DNA repair and recombination proteins [BR:
pcoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LK433_05120 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HRDC
HTH_40
ResIII
TniB
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
UEA43944
LinkDB
All DBs
Position
1248021..1250201
Genome browser
AA seq
726 aa
AA seq
DB search
MTEQVNLTGQLKHYFGFDSFKGDQEAIIRNLMSGNDTFVLMPTGGGKSLCYQLPSLIMEG
TAIVISPLIALMKNQVDVINSLSESDGVAHYLNSSLNKSAIEKVKNDILNGTTKLLYVAP
ESLTKEDNVEFLKTVKISFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGVAPVIALTAT
ATDKVRTDIKKNLGIMDAKEFKSSFNRPNLYYEVRPKNKDIDRQIIMFIRQHKGKSGIIY
CLSRKKVEELAEVLKANEIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGIDK
PDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYARKDLRKLEKFMENKPVAEQDI
GRQLLQETAAYAESSVCRRKMLLHYFGEEYHEENCHNCDNCLHPTEKFEAKDALLVVLES
VAAVKENFRQEYIIDFVKGRATDDIVSHRHDELEEFGAGEDMDAKVWNPVIRQALIAGYL
KKDVENYGLLKLTAAGKRFIKNPESFMIVADKEFSDDFDGAPLSEHNTGALDQTLFSMLK
DLRKTVAKKHKLPPYVIFQDISLEQMATMYPVDMQELQNIQGVGAGKAKRYGKEFCKLIN
QYCEENLIERPEELRVRTVAKKSVLKVSIIQSIDRQIDLDDLAEAKGLDFSELLDEIEAI
VYSGTKLNIDYFIEEVVDDDHVDDIYDYFMESDTDDLNAAQDELGEDYNEDEIRLVRIKF
LSEQAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaggttaatcttacaggacagttgaagcattatttcggcttcgattcgttt
aagggtgatcaagaggcaatcatcagaaatttgatgagtggcaatgatacttttgtattg
atgcctacaggtggcggtaagagtttgtgttaccagttgccttcgctcattatggagggc
acagctattgtgatttctcctctgattgctttgatgaagaaccaggtagatgttattaat
agtttgagtgaaagtgatggcgtggctcattatctcaattcatcattgaataagtcggct
attgagaaggtgaagaatgatattctcaatggtacgaccaaactcctgtatgttgcacct
gaatctttgacgaaagaagataatgttgagttccttaaaacagtaaagatttcgttctat
gccattgatgaggctcactgtatctctgagtggggacacgatttcagaccggagtatcgt
cgtattcgccctattattaacgaaataggtgttgcacctgtgatagcgcttacagctact
gcaacagataaggtacgtactgatatcaagaaaaacttaggcatcatggatgccaaagaa
ttcaagagttcttttaaccgtcctaacttgtattatgaggtgcgcccgaagaacaaggat
atcgatcgtcagatcatcatgtttattcgtcaacacaaaggaaagagtggtattatctat
tgtctctcccgtaagaaagtagaggaattggcagaggtattgaaagccaatgaaatcaaa
gcggctccttatcatgccggtcttgattcggctacccgttctcaaacccaggatgatttt
ctgatggagcgtattgatgtcattgttgctactatcgccttcggaatgggtatcgataaa
cctgatgtccgttttgttattcattatgatatacccaagagcttggaaggttattatcag
gaaacaggtagagccggacgtgatggaggcgagggtatatgtatcgccttctatgcccgt
aaagacctcagaaaactggaaaagtttatggagaacaaacctgtagcagaacaggatatc
ggcagacagttgttgcaggaaacggctgcctatgcagaatcgtctgtctgtcgcagaaaa
atgttgcttcattattttggtgaggaatatcatgaagaaaactgccataactgcgacaac
tgcctgcatcctacagaaaaattcgaggctaaggatgcgctgctcgttgttttggagtct
gttgctgcggtgaaggagaatttccgccaggaatatatcatcgattttgtaaagggacgt
gctactgatgatatcgtttctcacaggcatgatgaactggaggagtttggagcaggagaa
gatatggatgccaaagtttggaatcctgttatccgtcaggcgttgatagccggttatctc
aagaaagatgtagagaactatggccttttgaagttgacagctgcgggtaagcgtttcatt
aagaatcctgaatcattcatgatcgttgcggataaggaattctctgatgattttgatgga
gcgcctctgagcgagcataatacaggtgctttggatcagacacttttctccatgttgaaa
gacttgcgtaagacagtagcaaagaagcataaattgccgccttatgttattttccaggat
atttctctggaacagatggcaacgatgtatcctgtagatatgcaggaattgcagaacata
cagggagttggagccggtaaggcaaagaggtatggtaaggagttctgtaaattgatcaat
cagtattgtgaagagaatctgatagagcgtcctgaggaattacgtgtcaggacagttgcc
aagaaatcagtcttgaaggtaagcatcattcagagcatagaccgccagatagatcttgat
gatttggcagaagcaaaaggtttggatttctcagaattgcttgacgaaatagaggctatc
gtttacagcggtaccaagctgaatatcgattatttcatagaggaagttgtggatgatgac
catgtagatgacatctacgattacttcatggagagcgatactgatgatttgaatgcggct
caagatgaattgggtgaagactacaatgaagacgaaattcgactcgtcagaatcaagttt
ttgtccgaacaagccaactaa
DBGET
integrated database retrieval system
