Segatella copri: LK433_07005
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Entry
LK433_07005 CDS
T07933
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pcoi
Segatella copri
Pathway
pcoi03410
Base excision repair
pcoi03430
Mismatch repair
pcoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LK433_07005 (recJ)
03430 Mismatch repair
LK433_07005 (recJ)
03440 Homologous recombination
LK433_07005 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcoi03400
]
LK433_07005 (recJ)
DNA repair and recombination proteins [BR:
pcoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LK433_07005 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LK433_07005 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LK433_07005 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UEA41757
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Position
complement(1707576..1709297)
Genome browser
AA seq
573 aa
AA seq
DB search
MHFKWNYESPTPEQQKAAEELGAKLNMSPVLAHLLIKREITTESAAKRFFRPQLSDLINP
FLMKDMDIAVDRLNDAMGRKERILVYGDYDVDGCTAVALVYKFLQQFYSNIDYYIPDRYD
EGYGVSKKGIDFAHQTGVKLIIILDCGIKAIQEIEYAKSLGIDFIICDHHVPDDVMPPAV
AILNPKRPDDPFPFKHLCGCGVGFKFMQAFAKNNNIPFSRLIPLLDFCAVSIAADIVPVV
DENRILAFHGLKLLNTNPSIGLKSIIDICGLNGRELSMSDIVFKIGPRINASGRMENGKL
SVDLLVERDYSSALRMARHINEYNEQRKDIDKQMTEEANGIVSRLESMKHNSSIVLYDEG
WKKGVIGIVASRLTEIYFRPTIVLTRDGDMATGSARSVTGFDIYSAIKSCRDLLLNFGGH
TYAAGLTLKWDKVREFRDRFQHYVEEHISPQQTEPMLNIDAEIDFKDITKHLQADLKRFS
PFGPCNQKPIFCTNRVYDYGTSKVVGREQEHIKLELVDSKSSTVLNGIAFGQSAAARYIK
SKRSFDIAFTIEENIFKKNQVQLQIEDIRPNEG
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgcattttaaatggaattacgaatcaccaacacctgaacagcaaaaagcagctgaagaa
ttaggcgccaagctaaatatgagcccagttcttgcccatttgctcatcaagcgcgagatt
acgacagagtctgcagccaaacggttcttccgtccacaactctcagatctcatcaatcca
tttctgatgaaagacatggatattgccgtagaccgcctgaacgatgctatgggtagaaag
gaacgtatccttgtttacggagactatgacgtagacggatgcaccgccgttgccctggtg
tacaaattcttgcagcaattctattcaaacatcgactactacattcccgaccgctacgac
gaaggttacggagtgagtaagaaaggaatagattttgctcatcagactggtgtaaaactg
attattattctagactgcggaatcaaggctattcaggagatagaatatgccaagagtctg
ggaatagacttcatcatctgcgaccatcacgttcctgacgatgtgatgccacctgctgtg
gccatactcaatccgaagcgtcctgacgatccattcccattcaagcatctctgcggatgc
ggtgtagggttcaagtttatgcaggcttttgccaagaacaacaacattccgttctccagg
ctcattcctctgctcgacttctgcgccgtgagtattgctgccgacattgtgccggtggta
gatgagaacagaatactcgccttccatggtcttaagttgctgaataccaacccaagtatc
ggtctgaaatccatcatcgacatctgcggactgaacggacgcgagctctccatgagcgat
attgtgttcaagattggtccccgcatcaatgcttcaggcagaatggagaacggcaagctg
agcgtagatctgctggtagaaagagactattcctcagccctgcgcatggccagacacatc
aatgagtacaatgagcagcgcaaagacatagacaagcagatgactgaagaagccaacggc
atcgtatcgcgtctggaaagcatgaaacacaactccagcatcgtgctctatgatgaaggc
tggaaaaaaggagtcattggcattgttgcttcccgactcaccgaaatctacttccgccct
accattgttctgacccgggatggtgatatggctacaggttcagcacgtagcgtaacggga
tttgacatctactcagccatcaagagttgccgcgacctcctgctcaatttcggtggtcat
acctatgctgccggccttaccttgaagtgggataaggttagagagttcagagacaggttc
cagcattatgtagaagagcatatttcgcctcaacagacagaaccgatgctcaacatagat
gctgaaattgactttaaagacattaccaagcatctgcaggccgacctgaagcgcttctct
cctttcggtccatgtaaccagaaacctattttctgcaccaaccgggtatatgattatggt
accagcaaggtggtgggcagagaacaggaacacatcaagttggaactggtagactcaaaa
tcgagcacggtcttaaacggcatcgctttcggtcagagtgcagctgcccgctacatcaag
agtaagcgaagtttcgacatagccttcaccatagaagagaatatttttaagaaaaaccaa
gttcaacttcagatagaagacatccgtccaaacgaaggatga
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