Segatella copri: LK433_09500
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Entry
LK433_09500 CDS
T07933
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pcoi
Segatella copri
Pathway
pcoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LK433_09500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcoi03400
]
LK433_09500
Enzymes [BR:
pcoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LK433_09500
DNA repair and recombination proteins [BR:
pcoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LK433_09500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
Helicase_RecD
DEAD
nSTAND3
PIF1
UvrD_C
MeaB
CbiA
AAA_28
TrwB_AAD_bind
HHH_2
T2SSE
AAA_22
UvrD-helicase
TsaE
Ribosomal_S13
HerA_C
NTPase_1
AAA
AAA_16
AAA_24
RsgA_GTPase
ABC_tran
SRP54
ResIII
Motif
Other DBs
NCBI-ProteinID:
UEA42213
LinkDB
All DBs
Position
complement(2240144..2242387)
Genome browser
AA seq
747 aa
AA seq
DB search
MIKIRCVVEHITYQNQENGYSVMRVKVKDYSDLVTLVGNLLDVPVGAVLLCNGDWKVDKR
YGRQFVCETWEEVMPATVYGIEKYLGSGLVKGIGPKYAHLIVERFGTDTIEVIEDDIERL
YEVAGIGKKRVEKIRDSWEKQKDIKNVMIFLQQYGVSTAYAAKIYRQYGKESIDNVKENP
YRLADDIWGIGFKTADGIASKMGYEKNDLRRCKSGIGYTLNELSNEGHVYAIEEQLIEAA
KKLLEADEEPIRQAISEMIASEDLIRENEAIYLPPFYHSERGTAKKLLTLINSQGANNLG
LKADIKAIEKTSGIEYDEVQIAAIQQAIRSKVMVLTGGPGTGKTTTTQGIITAYKTAGMR
ILLAAPTGRASKRMSEATNMEAKTIHRLLEFNPQDGYKRNEENPLEGDALIVDECSMIDI
ILMYNLMKAIPEHMRLVLVGDIDQLPSVGAGNVLRDIIDSEKIPVVRLTRIFRQAQSSRI
VMSAHAINQGHYPDTSNGKQTDFFFIKNEDPEQVAEEIVKLVKYRLPKAYNQPLSNIQVL
TPMQRSVVGAANLNMMLQQALNTTTLGISRGGTTYKLGDRVMQIRNNYDKNVYNGDIGTV
EKVNIEDRTLCVNFDNNLVEYEATELDELTLAYASTIHKSQGSEYPIVVIPVLMTHFVML
QRNLIYTGITRAKKICVLIGQPKALAYAIRNLTVINRNTKLKERLRGEIEANNDSGLHIS
SRYILPEEQPMMAAEPEPNPDIRSNIK
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgataaagatacgttgcgtagtagaacacattacctaccaaaatcaagagaatggatat
tccgtgatgagggttaaggtcaaggattattcagaccttgttaccttggtaggcaacctg
ctggatgtaccagtgggcgctgtactattgtgtaatggtgactggaaagtcgataagcga
tacggacgtcaattcgtatgcgagacgtgggaagaagtgatgcctgcaactgtatatggc
atagagaaatatttaggaagcggactggtgaaaggcattggtccgaagtatgctcatctg
atagttgagaggttcggtactgatacaatcgaggtaattgaagatgacatcgaacgacta
tatgaagtggctggcatcggtaagaagcgtgtagagaaaatccgagacagttgggagaaa
cagaaggacatcaagaatgtaatgatcttcctgcaacaatacggagtaagtaccgcttat
gccgccaaaatttatcgccagtacggcaaggaaagcatcgacaacgtgaaagagaatcct
tatcgccttgcagatgatatttggggcatcggatttaaaaccgctgatggtattgcctct
aagatgggctacgagaaaaacgatttgagacgttgcaaaagtggtataggttacactttg
aatgaactttccaacgaaggacatgtatatgctatagaagagcagcttatagaagcagcc
aaaaaactgcttgaagcagacgaagaacctatcagacaagccatttcagagatgattgct
tcggaagatctcatccgtgagaatgaagctatatatctgcctccattctatcattctgaa
cgtggaacggcaaagaaactcttgaccttaataaatagtcaaggagcaaataacctcgga
ttgaaggctgatattaaagcgattgaaaagacctctggtatagaatatgacgaggttcag
attgctgccatccaacaagcgatccgctcgaaagtgatggtactgactggcggtcctggt
acaggtaagaccacaactacgcaaggtattattactgcgtataaaacggcaggaatgagg
attttgcttgcagcacctactggccgtgcgtccaagcgaatgagcgaagctaccaatatg
gaagccaagaccattcatagactattggagtttaatccacaagatggttacaaacggaat
gaggagaacccactggaaggtgatgcgctgattgtggatgagtgttctatgattgacatc
atattgatgtataatctaatgaaggctattcccgaacacatgcgcttagtgcttgtgggt
gatattgaccagttgccaagtgttggagctggcaatgttttgcgtgacattattgactcc
gagaagattcccgtagttcgactaacccgcatcttccggcaggctcaatccagtagaatc
gtcatgagtgcccatgccatcaaccaagggcattatccagatacgagcaacggcaagcag
accgacttcttctttatcaaaaatgaagacccggaacaagtggctgaagaaatagtaaaa
cttgtgaagtatcgcttgccaaaggcttacaatcagcctttaagcaacatccaggtactt
acgccgatgcaaagaagcgtggtaggtgcagccaacctgaacatgatgctacagcaagca
ctcaatacaactacattgggcataagccgtggtggtacaacttataagttgggcgaccgt
gtgatgcaaatacgtaacaattacgacaagaatgtgtacaatggtgacatcggaactgta
gaaaaagtcaacatagaagaccgcacactctgtgtcaactttgacaacaatctggtggaa
tatgaagcaacggagcttgatgagctaacattggcctatgcttctaccattcataaatcg
caaggttcagaatatccgatcgtggtaatcccagttttgatgactcattttgtgatgctt
cagcgcaacctcatctatacaggcattacgagagctaaaaaaatctgtgtgcttatcggc
cagcccaaagctctcgcttatgcaatacgtaatctgacggtaatcaacagaaacaccaaa
ttgaaagaacgactgcgtggagagatagaagcgaacaatgattctggtctccacatcagc
agtagatacatacttcctgaggaacagccaatgatggctgcggaaccagagccaaatcca
gacattagaagtaatattaaatga
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