Segatella copri: LK433_09555
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Entry
LK433_09555 CDS
T07933
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcoi
Segatella copri
Pathway
pcoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK433_09555 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcoi03021
]
LK433_09555 (rho)
03019 Messenger RNA biogenesis [BR:
pcoi03019
]
LK433_09555 (rho)
Transcription machinery [BR:
pcoi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LK433_09555 (rho)
Messenger RNA biogenesis [BR:
pcoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LK433_09555 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
S1CSD-TOTE-2
AAA_25
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
UEA42222
LinkDB
All DBs
Position
complement(2253147..2255378)
Genome browser
AA seq
743 aa
AA seq
DB search
MYSKEELQAKSVVQLKDIAKELGAKVKKSDNKGTIVYAILDAQAEQPAPEAAPKRKRTRI
ATKKEDRVYSVHGNEGENFDVQKNQVLGPNGGETAPQAMSETAPAPAVEEEIQFSPAEQS
LQSAAQKQTLNQSGEDIEAQVLANFPKHRGRRSKAELEAIAEARAAAIRKHQAVKAEIEA
QMAKDAQATANQQAATEAEQPEEATADNQQTAPEQAAPEQAAPEQAAVPEEQFSAGNAES
ANISGDLQAMLQAKMNAQNAAAPAPAAAPAPAEDAKEEATEKTATDKKQESAPIYYTEGM
KVELDADGTWKGDPGDGTDFIPVVDIPIEDQAAIPTVDIFDRPTTPQTSHQHTPAAAPAA
KNKQEAPAYDFSNLVKSNGVLEVISEGYGFLRSSDYNYLSSPDDVYVASSFVKKFGLKTG
DVIECKVRPPHEGEKYFPLTSIIKINGRDPSEVRDRVPFEHLTPLFPDEKFNLCGDRRTT
NLSTRIVDLFSPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPEAYLMMLLIDERPEE
VTDMARTVNAEVIASTFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYN
TTAPASGKVLTGGVDANALQKPKRLFGAARNIEGGGSLTIIATALTDTGSKMDEVIFEEF
KGTGNMELQLDRSLSNKRIFPAVNLISSSTRRDDLLQDKTTLDRMWILRKYLSDMNSIEA
MSTIHKNMQHTRNNDEFLLSMNS
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcaaagaagaattacaagcaaagagtgtcgttcagttgaaggacattgccaag
gaacttggagccaaggtaaagaagagcgataacaagggaactatcgtctacgccattctc
gacgcccaggcagaacagccagctcctgaagcagcccctaagcgcaagcgcacccgcatt
gcaaccaagaaagaagaccgtgtttattccgtacacggaaatgaaggagagaatttcgac
gtgcagaagaaccaggtattgggtcctaacggcggcgaaactgctcctcaggctatgagc
gaaactgccccagccccagcggttgaggaagaaatccagttcagcccggcagagcagagt
ttacaatcagctgcccagaagcagactctaaaccaatcaggcgaagacatcgaggctcag
gtacttgccaacttcccgaaacaccgcggcagaagaagcaaggcagaactcgaagctatt
gcagaagccagagcagctgccatcagaaagcatcaggcggtaaaagccgagatagaagcg
cagatggcgaaagatgcacaggcgacggctaaccagcaggctgctactgaggcagaacag
ccggaagaggcaacagccgataaccagcagacagctcctgagcaggcagcacctgagcag
gcagcacctgagcaagctgccgttcctgaagagcagttctctgccggaaacgctgagagc
gctaacatcagcggtgatttgcaggcgatgctccaggctaagatgaatgcacagaacgca
gcagctccagctccggcagccgctccggctccagctgaggacgcaaaggaagaagctact
gaaaaaactgcaaccgataagaaacaggagtcagctcctatctactatactgaaggtatg
aaggtagaactcgatgcagacggaacctggaagggtgatccgggcgatggaaccgatttc
atcccagtagtcgacattcctatcgaagaccaggctgccattcctactgtcgacatcttc
gaccgtcctaccactccacagacttctcaccagcacacacctgctgctgcccctgcagcc
aagaacaagcaggaagcaccagcctacgatttcagcaatctcgtgaaatccaacggtgtg
ctcgaagtgatttcagagggctacggattcctgcgcagcagcgattacaattacctttct
tcaccggacgatgtttatgtagcatccagcttcgtcaagaagttcggtctgaagactggc
gatgtcatcgagtgcaaggtgcgtccgcctcacgagggcgagaaatacttcccgctcacc
agcatcatcaagatcaatggccgtgacccgtcagaggttcgtgaccgtgttcctttcgag
cacctcaccccactcttccctgatgagaagttcaatctctgtggcgaccgccgcaccacc
aatctcagcacccgcatcgtagacctcttctcgccaatcggtaagggtcagcgtgcgctc
atcgtggctcagccaaagaccggtaagactatcctcatgaaggatattgccaacgccatc
gcagccaaccatcctgaggcttacctcatgatgctgctcatcgacgagcgtcctgaggag
gttaccgacatggcacgcaccgtgaatgcagaggttatcgcctctaccttcgacgagcca
gcagagcgccatgtcaagattgccggaatcgtgctcgagaaggctaagagaatggtagaa
tgcggacacgatgttgtcatcttcctcgattccatcacccgtctcgcccgtgcctacaac
accacagctcctgcatctggtaaggtgctcaccggtggtgtggatgcaaacgccctccag
aaacctaagcgactcttcggtgctgcgcgtaacatcgaaggcggcggttcgctcaccatc
atcgctaccgccctcaccgatacaggtagcaagatggatgaagtcatcttcgaggagttc
aagggaaccggtaacatggagttgcagctcgaccgctcactcagcaacaagcgcatcttc
cctgctgtcaacctcatttcttcgtctacccgtcgcgacgatctgctgcaggacaagaca
acgctcgaccgcatgtggattctgcgcaagtatctgtctgacatgaattctatcgaggcg
atgagcaccatccacaagaatatgcagcatactcgcaacaacgacgagttcctgctctct
atgaattcataa
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