Segatella copri: LK433_13485
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Entry
LK433_13485 CDS
T07933
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcoi
Segatella copri
Pathway
pcoi03030
DNA replication
pcoi03430
Mismatch repair
pcoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK433_13485 (dnaE)
03430 Mismatch repair
LK433_13485 (dnaE)
03440 Homologous recombination
LK433_13485 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcoi03032
]
LK433_13485 (dnaE)
03400 DNA repair and recombination proteins [BR:
pcoi03400
]
LK433_13485 (dnaE)
Enzymes [BR:
pcoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LK433_13485 (dnaE)
DNA replication proteins [BR:
pcoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LK433_13485 (dnaE)
DNA repair and recombination proteins [BR:
pcoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LK433_13485 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
T2SSK
Lip_prot_lig_C
Motif
Other DBs
NCBI-ProteinID:
UEA42952
LinkDB
All DBs
Position
complement(3211817..3215527)
Genome browser
AA seq
1236 aa
AA seq
DB search
MEDFVHLHVHTQYSILDGQSKIPHLVDKAIKDGMKGMAVTDHGVMFGIKELTDYCGKINK
DRKKEGLEPFKPIIGCEMYVARRTKADREKDKGDMSGYHLIVLAKNYNGYKNLIKLVSNS
WVDGYYMRPRTDRADLEKYHEDLIVCSACIAGEVPSKILHGDLEGAREACQWYHNLFGDD
YYLELQRHKVPDDPSLLANREAYELQQRANKELIKMAREFNIKLVCTNDCHFEDKETAEA
HDHLLCIATGKDLDDPNRMRYSKQEWFKTRQEMNEVFSDIPEALSNTLEVLDKVEIYSID
HGPIMPFFPIPESFGTEEQLRQKVSEEDLYKEFTSDENGKNPLPPEEGQKVIDRLGGYDK
IYRIKFEAEYLRHLAYEGAKKLYGDPLPEDVDEHVNFELHVMKTMGFPGYFLIVSDFIRA
AREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDDD
GRGKVLRWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLDKANALCKAIPDRLPD
GAKMNLTNAIKYTPELREAEFSNDPRESNTIKYAKMLEGTIRGTGIHACGFIICRDPISN
WVPVSTADDPDFPGLKTAVTQYDGHVIETTGLIKMDFLGLKTLSEMKEACKVIKQTTGDV
VDLDTIPIDDELTYQLYQRGQTIGTFQFESPGMQKYLRELKPTVFEDLIAMNALYRPGPM
DYIPDFIARKNGKQAITYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGESDALRK
AMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQ
TAYLKAHYPAEYMAALMTRRFAQITEITKLMEECQSMGIKTLGPDVNESYRVFGVNEHGE
IRFGLSAIKGMGAPAADAIVAERLKNGPYKSIFDFAERVDYSSVNRKAFETLALSGGFDS
FGIRREQFFGKNNKGETFLDTLVRYGQLFQQEQHEAANSLFGGTEAIEIATPPIPDAESW
STIERLNRERELVGIYLSAHPLDEYSIILNSLCNTHCSELGDKQELAKKEDVVLGGIITG
VKSKFTKTGKPCGFVTLEDFEGSGELALFGEDWGKWRGIMVEGSTIYITAKCVSRYGNAN
YLDFQIGNVEYLQTVKENRIDRFTINVESDAIDETMVSDLQTILENDEGKAQLFFQIHDV
DSNTYLLMRAREHTVGVGHALIQYIEQHPKMSYQIN
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggaagattttgttcatttgcatgtacacacccaatactccatcctcgacggccagtcg
aagataccgcatctggtagataaggccatcaaggacggcatgaagggtatggcggtaacc
gaccacggtgtgatgttcggcatcaaggaactcaccgactattgcggcaagattaataaa
gaccgcaagaaggagggactcgaacctttcaagcctatcataggctgcgagatgtatgtg
gcacgccgaaccaaagccgaccgagagaaggataagggcgatatgagcggttatcacctc
attgtacttgccaagaattataatggatacaagaacctcatcaagctggtgagcaattcg
tgggtggatggttactacatgcgcccacgaaccgaccgtgccgatctggagaagtatcac
gaagacctcatcgtctgttcggcatgtattgcaggcgaggtgccatccaagattctgcat
ggtgacctggaaggagcccgcgaggcttgccagtggtaccacaacctctttggcgatgat
tactatctcgagctccagcgccataaagtgcccgatgatcccagtctgcttgccaaccga
gaggcttacgagttgcagcagcgtgccaacaaggaactcatcaagatggcaagggagttt
aacatcaaactggtgtgcaccaacgactgccacttcgaggataaggagactgccgaggct
cacgaccatctgctctgtatcgctaccggcaaggatctcgacgaccctaaccgtatgcgc
tattccaagcaggaatggttcaagacccgccaggagatgaacgaggtgttctcggatatc
cccgaagcgctttccaataccctcgaagtattggataaggtggagatttacagcatcgat
catggtcctatcatgcctttcttcccgattccggagagtttcggtaccgaggagcagttg
cggcagaaggtatcagaagaagacctctacaaggagtttacctctgatgagaacggcaag
aacccgctgccaccagaggaaggtcagaaggtaatcgaccgattgggcggttacgataag
atataccgtatcaagtttgaggcagaatatctgcgccaccttgcctacgagggagccaaa
aagctttatggcgacccgctgcccgaggatgtagacgagcatgtaaacttcgagctccat
gtgatgaagaccatgggtttcccgggctacttcctcatcgtgtcagacttcatcagggcg
gcgcgcgaggaactcggcgtgatggtgggcccgggacgtggatctgcggcaggttcggtg
gtggcttactgcttgggcattaccaagattgacccattgaagtacgacctcctgtttgag
cgtttcctgaacccagaccgtgtgaaccttccggatattgataccgactttgatgatgac
ggccgaggcaaggtgctgagatgggtaatggataagtatggtcatgagaactgtgcccat
atcattacctacggttccatggcgacgaagaactccatcaaggatgtggcgcgtgtagag
aagttgccgttggataaggcgaatgcactctgcaaggctatcccagaccgattgcctgac
ggtgccaagatgaacctgaccaatgccatcaaatataccccagagctgcgcgaggcagag
ttctccaacgatccccgcgagagcaataccatcaagtatgccaagatgctcgaaggaacc
atccgaggcacgggtatccatgcctgcggattcatcatctgccgcgaccctatcagcaac
tgggtgcctgtatctactgccgatgaccctgatttcccgggactgaagacggcggtaacg
cagtacgacggccatgtcatcgagaccaccggtctgattaagatggacttcctgggcttg
aagaccctctccgagatgaaggaggcatgcaaggttatcaagcagactacgggcgatgtc
gttgacctcgataccatccctatcgatgacgagctgacctatcagctctatcagcgcggt
cagaccatcggaaccttccagttcgagtcgccgggtatgcagaagtatctccgtgagctg
aagcctacggtgttcgaggacctcatcgccatgaacgccctctaccgtccgggacctatg
gattacatccctgacttcattgcccgcaagaacggcaagcaggcgattacctacgatatc
ccgtgtatggagaagtatctgaaggatacctacggcatcacggtctatcaggagcaggtg
atgcttctttcccgtcagttggcgagcttcacccgaggcgagtctgatgcgctgcgtaag
gcgatgggtaagaagaaaaaggccatcgtagatgcgatgaagcctaagtttatcaagcag
ggacaggagaacggccacgacccgaaggtgctggagaagatatggggcgactgggagaag
tttgcttcctacgccttcaacaagtctcatgccacctgttattcgtgggtagcctaccag
actgcctatctcaaggcgcactatcctgccgaatacatggcggcgctgatgacccgacgc
tttgcacagattaccgaaatcaccaagctgatggaggagtgccagtcgatgggcatcaag
accttgggaccggatgtgaacgagagttaccgcgtgttcggtgtgaacgagcatggagag
atacgtttcggtctttcagccatcaagggtatgggtgctccggcagccgatgccatcgtg
gcagagcgactgaagaacggaccttataagagcatcttcgattttgccgagcgtgtagat
tactccagcgtgaaccgcaaggctttcgaaaccttggcgctgagtggcggtttcgacagc
ttcggcatccgtcgcgagcagttcttcggcaagaacaacaagggcgaaaccttcctcgat
acgctggtgcgctacggtcagctcttccagcaggaacagcacgaggctgccaactcactc
tttggcggtaccgaggcgatagaaatagctacgccgcctattcctgatgcagagagctgg
agcaccatcgaacgtctgaaccgtgagcgcgagcttgtgggcatctatctttctgcccat
ccgctcgatgagtacagcattatcctcaactccctctgcaatacccattgctctgaactg
ggcgacaagcaggagctggcaaagaaggaggatgtggtgctgggcggcatcatcacgggt
gtgaagtcgaagtttaccaagacgggcaagccgtgcggtttcgttacgctcgaagacttt
gagggctcaggcgagctggctctctttggcgaggactggggcaagtggcgcggcatcatg
gttgaaggcagcaccatctacatcaccgccaagtgcgtttcccgttacggcaatgccaac
tatctcgatttccagataggcaatgtggagtatctgcagacggtcaaggagaaccgcatc
gaccgcttcaccatcaatgtggagagcgatgcgatagatgaaacgatggttagcgacctg
cagaccattctggagaatgacgagggcaaggcgcagctctttttccagatacatgatgta
gacagcaatacctatttgctgatgcgtgcccgtgagcatacggtgggtgtgggccatgcc
ctcatccagtatatcgagcagcatcctaagatgagctatcagatcaattag
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integrated database retrieval system
