Proteus columbae: F1325_00945
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Entry
F1325_00945 CDS
T06419
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcol
Proteus columbae
Pathway
pcol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1325_00945 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcol03019
]
F1325_00945 (rhlB)
Enzymes [BR:
pcol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1325_00945 (rhlB)
Messenger RNA biogenesis [BR:
pcol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1325_00945 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
PIN_9
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
QHN09117
UniProt:
A0A6I7D8X9
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All DBs
Position
complement(184163..185467)
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AA seq
434 aa
AA seq
DB search
MSKTYLTEKKFSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGQDIAGQAQTGTGKT
LAFLTSTFHYLLTHPAKEGHETNQPRALIMAPTRELAVQIYSDAKELAQNTGIKMGLAYG
GDGYDEQLKVLSNGVDIVIGTTGRLIDYVKQGHINLSAIQVVVLDEADRMYDLGFIKDIR
WIFRRMPVAAERMNMLFSATLSYRVRELAFEQMNNPEYVEVEPEQKTGFSIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILE
DFTQGNIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGNSGNSISLA
CEEYALNLPAIETYIQHAIPVSKYNSDALLADLPEPKRRHRPRQGQPRRNNAPVRNNRGN
NTQRNNRNKRPSHP
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacatatttgacagaaaagaagttttccgacttcgccttgcatccaaaagtg
atagaagcccttgagaaaaaagggttctctaattgtacacaaattcaggcattgacgtta
cctatcactgtgaaaggtcaagacattgccgggcaagcccaaacaggaacaggcaaaacg
ttggcgtttttaacctcaacgtttcattatcttttaacacaccctgctaaagaagggcat
gaaaccaatcaacctcgtgcacttattatggcgccaacacgtgaattagccgtgcagatt
tattctgatgctaaagagcttgcgcaaaatacagggattaaaatgggtctcgcctatggt
ggcgatggctatgacgaacaactcaaagtattaagtaatggtgtcgatattgttattggc
acaacaggtcgtttaattgattacgttaaacaaggccatattaaccttagcgcaatccaa
gttgtggtacttgatgaagctgacagaatgtacgatctcggctttattaaagatattcgt
tggattttccgtcgtatgccagttgcggctgagcgtatgaatatgctgttttctgcaacg
ctttcttaccgcgtcagagaactggcttttgagcagatgaataaccctgaatatgttgaa
gttgaacctgaacaaaaaacaggttttagcataaaagaagaactcttttatccttcaaat
gaagagaaaatgcgtcttcttcaaacattaattgaagaagaatggccagatcgctgtatc
attttcgccaatacaaaacatcgttgtgatgacatttgggcacaccttgccgcagatgga
caccgcgtgggtttattaacaggtgatgttcctcagaaaaagcgtctacgcattttagaa
gattttacccaaggtaatattgatattctggttgccactgacgttgctgctagaggtctt
catattccatcagtaacgcatgtttttaactatgatttacctgatgattgtgaagattat
gttcatcgtattggtagaacagggcgtgctggaaatagtggtaactcaatcagccttgca
tgtgaagaatatgcactgaatttaccagcaattgagacttatattcaacatgctattcct
gtgagtaaatataatagtgatgcgttattagctgatcttcctgagcctaaacgccgtcac
cgtcctcgccaaggtcagcctcgtcgcaataatgcgccagtgcgaaataatagaggaaat
aatactcaacgtaacaaccgaaataaacgcccgagtcatccataa
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