Proteus columbae: F1325_04170
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Entry
F1325_04170 CDS
T06419
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcol
Proteus columbae
Brite
KEGG Orthology (KO) [BR:
pcol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcol03016
]
F1325_04170
Enzymes [BR:
pcol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
F1325_04170
Transfer RNA biogenesis [BR:
pcol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
F1325_04170
Prokaryotic type
tRNA splicing ligases
F1325_04170
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF4402
Motif
Other DBs
NCBI-ProteinID:
QHN09708
UniProt:
A0A6I7D9B3
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All DBs
Position
902241..903464
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AA seq
407 aa
AA seq
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MILDHQIVKEAGTAEIKMWTNGVPVEADALKQLINTAKMPFIFKHMAVMPDVHLGKGSTI
GSVIPTKGAIIPAAVGVDIGCGMIAVKTSLHANDLPDNLFAIRTAIERAVPHGRTSYQSG
NDRGSWKNPPKLVDQHWQQLEGRFKVLTDKYPRLRNTNNYRHLGTLGTGNHFIELCLDES
DNVWVMLHSGSRGVGNAIGTLFIQMAQEDMREHIANLPDKNLAYLKEGTLFYDDYIEAIE
WAQDFARHNREIMMERVLAALSTQITKPFTTQQQAVNCHHNYVQKEMHFGEEVLVTRKGA
VSAQKGEMGIIPGSMGAKSFIVRGKGNAESFCSCSHGAGRVMSRTAAKKAFSVEDQIRAT
AHVECRKDEDVIDEIPMAYKDIDAVMKAQLSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatattggatcatcaaatagtaaaagaagcaggaactgctgaaatcaaaatgtggaca
aatggtgtacctgttgaagcagatgctctaaaacaacttattaataccgcgaagatgcct
tttattttcaaacatatggcagtaatgccagatgttcacttagggaaaggttcaacaatc
gggagtgttattccaacaaaaggcgcgattattccagctgctgttggtgtggatattggg
tgtggaatgattgcggtgaaaacatcattacacgcaaatgatctgccagataatttattt
gccataagaacggcaatagaaagagcagtacctcatggaagaacaagttatcaatcaggg
aatgatcgtggttcatggaagaacccacctaaacttgttgatcaacattggcaacaactt
gaagggcgttttaaggttttaactgataagtacccacgtttacgaaatacgaataactat
cgtcaccttggtacattaggaacaggaaatcactttatcgaattgtgtcttgatgaatca
gataatgtttgggtaatgctacatagtggctctcgtggtgttggtaatgctatcggtacg
ttatttatacaaatggcacaagaagatatgagggaacatatcgctaatttacctgataaa
aacttagcgtatttaaaagaaggaacgcttttctatgatgactatatagaagccatagaa
tgggcacaggattttgcccgacataatcgtgaaattatgatggaacgcgtgttggcggca
ttatcgacacaaataactaaaccttttacgacacagcaacaggcggtgaactgccaccat
aactatgtacaaaaggaaatgcactttggcgaagaagtactggtgactcgaaaaggagcc
gtttcagctcagaaaggtgaaatggggatcatccctggttcaatgggcgctaagagcttt
attgtaagaggaaaaggaaatgccgaaagtttctgttcatgtagtcatggcgcaggacgc
gtaatgagccgaacagcagcgaaaaaagcttttagtgttgaagaccaaattcgagcaaca
gcacatgtggaatgtcgaaaagatgaagatgtgattgatgaaattccgatggcttataag
gatattgatgctgttatgaaggctcagttatcacttgttgaggttgttcatacactacga
caggttgtttgtgtaaaaggataa
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