Pandoraea commovens: NTU39_00780
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Entry
NTU39_00780 CDS
T08365
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcom
Pandoraea commovens
Pathway
pcom02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NTU39_00780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcom03021
]
NTU39_00780
Transcription machinery [BR:
pcom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NTU39_00780
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_24
Sigma70_ECF
HTH_23
HTH_40
LacI
GerE
HTH_10
Xre-like-HTH
Trp_repressor
HTH_Crp_2
RepL
Motif
Other DBs
NCBI-ProteinID:
UVA79612
UniProt:
A0ABY5QGQ5
LinkDB
All DBs
Position
complement(86728..87261)
Genome browser
AA seq
177 aa
AA seq
DB search
MMRDDNGGRKDHARADASGVAALYHDHHGWLRNWLHRKLGNHGDAADLAHDTFVRLLSKD
TPVCPREPRAFLTVVAQGLVANLHRHRKIEAAYLDALAAQPEAVAPDPETRAILLQTLID
IDRRLDGLPPVVRRVFLMSQLDGLAQRDIAETVGISIATVQRHIVKALHACCFGDAA
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgtgacgacaacgggggacgcaaagatcacgcacgcgcggacgcgtccggcgtg
gccgcgctctatcacgatcaccacggctggctgcgcaactggctgcatcgcaaactcggc
aatcacggcgacgccgccgacctcgcgcacgacactttcgtgcgtctgctcagcaaggac
acccccgtctgcccgcgcgaaccccgcgcctttctcactgtggtcgcgcaaggactggtc
gccaatctgcatcgccatcgcaagatcgaagctgcttatctcgacgcgctcgccgcacag
cccgaagccgtcgcgcccgaccccgagacccgcgccatcctgctccagacactcatcgac
atcgatcgtcgcctcgacggcctgccgcctgtcgtgcgccgcgttttcctcatgtcgcaa
ctcgacggcctcgcacagcgcgacatcgccgagaccgtcggcatctccatcgcgaccgtg
caacgccatatcgtcaaagccctgcacgcctgctgtttcggagatgctgcatga
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