KEGG   Pandoraea commovens: NTU39_02780
Entry
NTU39_02780       CDS       T08365                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
pcom  Pandoraea commovens
Pathway
pcom02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pcom00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    NTU39_02780
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:pcom02022]
    NTU39_02780
Two-component system [BR:pcom02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   NTU39_02780
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_16 AAA_2 AAA HTH_50 HTH_30 HTH_Tnp_ISL3 AAA_7 TIP49
Other DBs
NCBI-ProteinID: UVA82000
LinkDB
Position
525471..526820
AA seq 449 aa
MYKNLQILFVEDDELVRRATLQSLQLAGLDAFGLASAEAARERITPDFAGIVVSDIRLIG
MSGLELLAHLRQHAPEVPVILVTGHGDISMAVQAIRDGAYDFIEKPFAPDRLIESAKRAL
ETRKLMLENQALRRELAEQGGRASRIIGRSPSMETLRTLIANVAMTDAPVLINGDTGTGK
ELVARSLHELSRRRDAPFVALNCGALPEAIFESEMFGHEVGAFTGAAKRRIGKLEHASGG
TLFLDEIESMPAALQVKLLRVLQDGVLERLGSNQSIRVDCRVVAAAKGDMEALVREGTFR
RDLYYRLNVVTLALPPLRERREDILPLFEHFMLDAAVRYGRPAPVVSDRMRQELLQSDWP
GNVRELRNAADRLVLGVASAPEGESLAPLPLKEQVERFERAVLQEALEHSKGNVAATAEA
LHVPKATLYEKLKRYGLHTRGHGEGGDGR
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgtacaagaacctccagatcctatttgtcgaagacgacgaactcgtgcggcgtgccacg
ctgcaaagcctgcaactcgccgggctcgatgccttcggacttgcctctgcagaggcggcg
cgagagcgcatcacgccggacttcgccggtattgtcgtgtcggacattcgtctgatcggc
atgagcgggctcgaattgctcgcgcatctgcgtcagcacgcgccggaagtgccggtcatt
ctcgtcacaggtcatggcgatatttcgatggcggtgcaagccattcgcgacggcgcttac
gacttcatcgagaaacccttcgcgccggaccgtctgatcgagtcggccaagcgtgcgctg
gaaacgcgcaagctcatgctggagaatcaggcgctgcgtcgtgaactggcggagcagggc
ggacgcgcctcgcgcatcatcggacgtagcccgtcgatggagacgttgcgcacgttgatc
gccaacgtcgccatgacggatgccccggtgctcatcaacggcgacaccggcaccggcaag
gagctggtcgcgcgtagtctgcacgagttgtcgcgtcgccgcgatgcaccgttcgtcgcg
ctgaactgcggcgcattgcccgaggcgatcttcgagagcgagatgttcggtcacgaggtc
ggcgcgtttaccggcgcggcgaaacgtcgtatcggcaagctggaacatgcgtcgggcggc
acgttgtttctcgacgagatcgagagcatgcccgccgcgttgcaggtgaagttgctgcgc
gtgttgcaggatggcgtgctggagcgcctcggatcgaaccagtcgattcgtgtggactgc
cgcgtggtggcggccgccaagggcgacatggaagcgctcgtgcgcgaggggacgttccgt
cgcgacctttactaccgtttgaacgtggtgacgcttgcgctgccaccgctgcgcgagcgt
cgtgaagacatcctgccgctgttcgaacatttcatgctcgatgcggccgtgcgttacgga
cgccccgcgccggtggtgtcggaccggatgcgtcaggagttgctgcagtcggactggccg
ggcaacgtgcgcgagttgcgcaacgcggccgaccgtctggtgctgggtgtggcgagcgcg
cccgaaggggagtcgctcgcaccgctgccgctcaaggagcaggtggaacggttcgagcgg
gccgtgcttcaggaggcgctggaacacagcaagggcaacgtggcagcgacggccgaggcg
ttacatgtgccgaaggcaacgctgtacgaaaaactcaagcgctacggcttgcatacgcgc
gggcacggcgaggggggagacgggcgctga

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