Pandoraea commovens: NTU39_06395
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Entry
NTU39_06395 CDS
T08365
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTU39_06395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcom03019
]
NTU39_06395
Enzymes [BR:
pcom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NTU39_06395
Messenger RNA biogenesis [BR:
pcom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NTU39_06395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UVA80635
UniProt:
A0ABY5QL61
LinkDB
All DBs
Position
complement(1294347..1295795)
Genome browser
AA seq
482 aa
AA seq
DB search
MSFDSLGLIDPLLRNLQDLNYETPTPVQAKAIPAVLAGKDVMAAAQTGTGKTAGFALPLL
QRLVQLGPQVSSNRARVLVLVPTRELAEQVLQSFVEYGKGLGLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFTDDIRAMAANILREPVDISVSPRNATASKIKQWVIPVDKRNKPDLFMHLVA
ENDWKHALVFVKTRNGVDYLAGVLDEAGYSVDTIHGDKPQPARLRALERFKTGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIQQTLRREEEPGFEAEHRVPETSATGQIIKKPKKPKKPKVPSLPQGGVGKQPAPSKKA
MPQHGEKKHKPAAQRPASTGNSPKPASGNPFSGQKTRSKPAKDSVANLLKPAGKPSGGRG
KR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactcgttgggtctgatcgatccgttgctgcggaatttgcaggatctcaac
tacgagacgcctacgccggtgcaggcgaaggcgattcctgccgtcctcgcgggcaaggac
gtcatggcagccgcgcagaccggcacgggcaagacagcgggtttcgcgctgccgctgttg
caacgtctcgtgcaactcggaccgcaagtgtccagcaaccgggcgcgcgtgctggtgctg
gtgcccacgcgcgaactggcggaacaggtgctgcaaagcttcgtcgagtacggcaaggga
cttggcttgcgatttctcgcagcctacggcggcgtgagcatcaatccgcaaatgatgaag
ctgcgcaagggcgtagatgtgctcgtggcaacgccgggtcgtctgctggatctgaatcgc
cagaacgccgtgcagtttgatcaggtgcagacgctggtgctagacgaagccgaccgtatg
ttggatctgggcttcgcgcgagaactcaacgcagtgtttgcggcgctcccggcccaacgt
cagacgctgttgttctccgcgacgtttaccgacgacattcgcgcgatggccgcgaacatt
ttgcgagagccagtcgacatcagcgtgagtccgcgcaatgccacggccagcaaaatcaag
cagtgggtcatcccggtggacaagcgcaacaagccggatctcttcatgcatctggtcgcc
gagaacgactggaagcacgcgctggtgttcgtcaagacccgtaatggcgtggactatctg
gcgggcgttctggatgaggcgggctactcggtcgacacgatccacggcgacaagccgcag
cccgcacgactgcgtgcgctggagcgattcaagacgggcgaagtgcagatgctggtggcg
accgacgtcgccgcgcggggactggacatcgacgacctgccgctcgtcatcaacgtcgat
ctgccgatcgtggcgcaagactatgtacaccggatcggccgcaccggtcgcgcgggggca
agcggcgtggccgtatcgctcgtgtgtgccgatgaagcgccacaattggccgccatcgaa
gcactgatccagcaaacgctgcgtcgcgaggaagaacccggcttcgaagccgaacaccgc
gtgccggagaccagcgcgacggggcaaatcatcaagaagccgaaaaagccgaagaagccg
aaggtgccgagccttccgcaaggcggcgtcggcaagcaacccgcgcctagcaagaaggcg
atgccgcaacacggcgagaagaagcacaaacccgcggcacagcgcccggcgtcgacgggt
aacagtccgaagcccgctagcggcaacccgttcagcggacaaaagacgcgtagcaagccc
gcgaaagactccgtcgcgaatttgcttaagcctgccggtaaaccttcgggtggtcgcggc
aaacgctga
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