Pandoraea commovens: NTU39_07285
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Entry
NTU39_07285 CDS
T08365
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
pcom
Pandoraea commovens
Pathway
pcom00540
Lipopolysaccharide biosynthesis
pcom01100
Metabolic pathways
pcom01250
Biosynthesis of nucleotide sugars
Module
pcom_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
NTU39_07285 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pcom01005
]
NTU39_07285 (rfaD)
Enzymes [BR:
pcom01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
NTU39_07285 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
pcom01005
]
Core region
NTU39_07285 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Polysacc_synt_2
KR
NAD_binding_10
DapB_N
Motif
Other DBs
NCBI-ProteinID:
UVA80797
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All DBs
Position
1497469..1498473
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AA seq
334 aa
AA seq
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MTIIVTGAAGFIGANLVKALNERGETDIVAVDNLTRADKFRNLVDCEISDYLDKTDFVAR
FQRREFGRVRAIFHEGACSDTMETDGRYMMENNFRYTRALFEACQTQTVPFLYASSAATY
GASETFVETREYEKPLNVYGYSKFLFDQIVRRAMRDAGGKLPSQVAGFRYFNVYGAREAH
KGRMASVAFHNFNEFRANGRVKLFGEYNGYAAGTQSRDFVSVEDVVKVNLHFFDHPERSG
IFNLGTGRAQPFNDIAVAVINTLRAETGEAALSLDDMVKQGLVEYIPFPDALRGKYQCFT
QANIDHLRQVGGYQQPFYTVGEGVSRYVRWLLAQ
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcatcgtgacgggcgccgcgggcttcatcggcgccaacctcgtcaaagccctc
aatgagcgcggagagaccgacatcgtggcggtcgacaatctcacgcgcgccgacaaattt
cgtaatctggtcgattgcgaaatcagcgattacctcgacaagacggatttcgtcgcacgc
tttcaacgccgcgaattcggccgcgtgcgcgcgatctttcatgaaggggcctgctccgac
acgatggagacggacggtcgctacatgatggagaacaacttccgctacacgcgggcgctg
ttcgaggcgtgccagacgcagaccgtgccgttcctgtatgcctcgtcggcggcaacgtac
ggtgcgtcggaaaccttcgtggagacgcgcgagtacgagaagccgctcaacgtctacggc
tattcgaagttcctgttcgaccagatcgtgcgccgtgccatgcgtgacgctggcggcaag
ttgccgagccaggtggcgggcttccggtacttcaacgtgtatggggcacgtgaagcgcac
aagggccgcatggcctcggtggcgttccacaacttcaatgaattccgcgcaaacggccgt
gtgaagctctttggcgagtacaacggctatgccgccggtacgcaaagccgcgacttcgtc
tcggtcgaggacgtcgtgaaggtcaacctgcacttcttcgatcacccggagcgcagcggt
atcttcaatctcggcacgggccgggcgcagccgttcaacgacatcgcggtcgccgtgatc
aacacgctgcgcgcggagaccggcgaagcggcgttgtcgcttgacgacatggtcaagcag
ggcctcgtggagtacatcccgttcccggacgccctgcgcggcaagtatcagtgcttcacg
caggcgaacatcgaccatctgcgtcaagtcggcggttatcagcagccgttttacacggtg
ggcgagggcgtttcccgctacgtgcgctggttgctggcgcagtaa
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