Pandoraea commovens: NTU39_10845
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Entry
NTU39_10845 CDS
T08365
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcom
Pandoraea commovens
Pathway
pcom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTU39_10845 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcom03021
]
NTU39_10845 (rho)
03019 Messenger RNA biogenesis [BR:
pcom03019
]
NTU39_10845 (rho)
Transcription machinery [BR:
pcom03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NTU39_10845 (rho)
Messenger RNA biogenesis [BR:
pcom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NTU39_10845 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UVA81464
UniProt:
A0A5E4W2N7
LinkDB
All DBs
Position
complement(2322125..2323387)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKSQHVSELLEMANGLEIENANRLRKQELMFAILKKRAKSGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GHPPEASKHKIMFENLTPLHPNKPLLLERDIRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAITANHPEAKLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV
QVAEMVIEKAKRLIEMKEDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKLIYDMDEAEAMEFLLGKIKQTKNNAEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaagtcccagcacgtctccgagctgctagaaatggcgaacggt
ctcgaaatcgagaacgccaaccgccttcgcaagcaggagctgatgttcgccattcttaag
aagcgcgcaaagtccggcgaaaccatctttggcgacggtacgctcgaagtgctgccggac
ggcttcggtttcctgcgctcgcccgagacgtcgtatctggccagcacggacgatatctat
atcagcccgtcgcagatccgccgcttcaacctgcataccggcgacacgatcgaaggggaa
gtgcgtacgccgaaagacggcgagcgttatttcgcgctggtgaaggtcgacaaagtcaac
ggccacccgcctgaggcctcgaaacataagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgctgcttgagcgcgacattcgcggcgaagagaacgtgacgggccgc
atcatcgacatgatcgccccgatcggcaagggccagcgtggtctgctggttgcttcgccg
aagtccggtaagaccgtgatgctccagcacatcgctcacgcgatcacggccaatcacccg
gaagccaagctcttcgtgctgctcatcgacgagcgcccggaagaagtgacggaaatgcag
cgctcggtgcgcggcgaagtgatcgcgtcgacgttcgacgaaccggccacgcgtcacgtt
caggttgcggaaatggtcatcgagaaggccaagcgcctgatcgaaatgaaagaagacgtg
gtgattctgctggactcgatcacgcgtctggcccgcgcctacaacaccgtgatcccggca
tcgggcaaggtgctgaccggcggcgtggacgccaacgccctgcaacgcccgaagcgcttc
ttcggtgcggcgcgtaacgtcgaagaaggtggctcgctcacgatcatcgccacggcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagaattcaagggcacgggcaac
atggaagtgcaccttgagcgtcgcctggcggaaaagcgcgtctatccgtcgatcaacctg
aacaagtcgggtacgcgtcgcgaagaactgctgatcaagccggaaatcctgcaaaagatc
tgggtgctgcgcaagctcatctacgatatggacgaagccgaagcaatggaattcctgctt
ggcaaaatcaagcagacgaagaacaacgccgagttcttcgacctgatgcgccgcggcggc
tga
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