Pandoraea commovens: NTU39_11545
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Entry
NTU39_11545 CDS
T08365
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTU39_11545 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcom03019
]
NTU39_11545 (rnr)
03016 Transfer RNA biogenesis [BR:
pcom03016
]
NTU39_11545 (rnr)
Enzymes [BR:
pcom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NTU39_11545 (rnr)
Messenger RNA biogenesis [BR:
pcom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NTU39_11545 (rnr)
Transfer RNA biogenesis [BR:
pcom03016
]
Prokaryotic type
tRNA degradation factors
NTU39_11545 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Rrp44_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
UVA81580
UniProt:
A0ABY5QNV9
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All DBs
Position
2464670..2467249
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AA seq
859 aa
AA seq
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MSKYPYPIPSREEILGVLRTADSALSANDIAEALAIKKQEREGFFKRLAAMERDDQIRLD
RRGYYQLTHPSNFIAGRVIGHRDGYGFAVRDDDGDDLFLPTEEMKKVMHNDRVLLRVAGY
DRRGRPEGHIVEVVSRANTHVIGRLLNENGVMVVAPEDKRISHDILIPPRAQGKAKVGQV
VSVELTDYPSRYSQPIGRVSEVLGDIDDPGMEIEIAVRKYGVPHQFSAEALAAAGALPDE
VRAPDLRHRIDLRDVPLVTIDGEDARDFDDAVYCEPAKIGRTNGFRLLVAIADVSHYVAA
GGPLDADALTRSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRCVLVCDALVAPNGEVKAY
QFYPAVIHSAARLTYTEVAAVLGNTKGAEAQRRATLLPHLQNLYDLYKVLAKARKSRGAI
EFDSTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLKRHKQPGLYRIHA
GPSGERLQVLRTFLKTLGLSLGGGDEPATSDYSELMTQIESRPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLAYPAYTHFTSPIRRYPDLLTHRAIKAILAGKKYEPEIPAGVELTTGLSP
HARKLQKDDDKNKKSPSAKKRDAIWDELGLHCSANERRADEASRDVEAWLKCYFMRDKLG
EEYGGTVSAVTSFGIFVQLDDLFIEGLVHVTELGSDYFQFDEVRHELRGERTGIRYRLTD
RVRVQVSRVDLDARKIDFRLVREPNARSLAKTSGRSERGGAPVPTPAAGTPGIAGSASAG
PTIRQLPKGGALLNGVQPAPAGKRPAKPKSAKVKAARAERGAAPAKHSGSGKAPAKRQGG
QGGQGGQGGPGGQTKKPRR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccctatccgatcccgagtcgcgaagagatcctcggtgtcctgcgcacc
gcagactccgcgctgtccgccaacgatatcgccgaagccctcgccatcaagaagcaagaa
cgcgaaggcttcttcaagcgcctcgccgccatggaacgtgacgaccaaattcgtctcgac
cgccgcggctactatcagttgacccacccgtccaatttcatcgcaggccgtgtcatcggc
caccgcgatggctacggcttcgccgtacgcgacgatgacggcgacgacctcttcctcccc
accgaggaaatgaagaaggtcatgcacaacgatcgcgtcctcctgcgcgtcgccggctat
gaccgccgcggtcgcccggaaggccatatcgtcgaagtcgtcagccgcgccaacacccat
gtcataggccgtctcctcaatgagaacggcgtcatggtcgtcgcgcccgaagacaaacgc
atcagccatgacatcctgatcccaccccgcgcccaaggcaaagcgaaggtcggacaggtc
gtctccgtcgaactcaccgattaccccagccgctatagccagcccatcggccgcgtctcg
gaagtcctcggcgatatcgacgaccccggcatggaaatcgaaatcgccgtgcgcaagtac
ggcgtgcctcaccagttctccgccgaagccctcgccgccgccggtgcactccccgacgaa
gtccgtgcccccgatctgcgccaccgcatcgacctgcgcgacgtccccctcgtcaccatc
gacggtgaagacgcccgcgacttcgacgacgccgtctactgcgaacccgcgaagatcggc
cgtaccaacggcttccgcctgctcgtcgccatcgccgacgtctcgcattacgtcgccgca
ggtggcccgctcgacgccgacgccctcacgcgtagcacctccgtctacttcccgcgacgc
gtcatcccgatgctcccggaaaagctctcgaacggcctgtgctcccttaacccggacgtc
gaccgctgcgtactcgtctgcgacgcactcgtcgcaccgaacggcgaagtgaaggcctat
cagttctatccggccgtcatccattccgccgcacgcctgacctacacggaagtcgccgcc
gtcctcggcaacacgaagggcgccgaagcacaacgccgcgcaacgctgctgccgcacctg
caaaacctgtacgacctctacaaggtgcttgccaaggcacgcaagtcgcgcggcgcgatc
gagttcgattcgacggagacgtatatcgtctgcaacgcgcaaggcaagattgagcagatc
ctcccgcgtacgcgcaacgatgcccaccgcctcatcgaggaatgcatgctcacagccaac
gtctgtgcagccgacttcctcaagcgtcacaaacaacccggcctgtatcgtattcacgca
ggcccctcgggcgaacgcctccaggtgctgcgcaccttcctcaagacgctcgggctctcg
ctcggtggtggggacgaaccggccacgtccgactactcggaactgatgacgcaaatcgag
tcccggcccgatgcgcccatgctccagacgatgctcctgcgctcgatgcagcaggccgtc
tacagcccggacaacatcggccacttcggtctcgcgtacccggcttatacccacttcacc
agcccgattcgtcgttatccggacttgctcacgcaccgcgccatcaaggccattctcgcg
ggcaagaagtacgagccggaaatccccgccggtgtcgaactgacgacgggcctctcgccc
cacgcacgcaagctgcaaaaggacgacgacaagaacaagaagtcgccgagcgcgaagaag
cgcgacgccatctgggacgaactcggcctgcattgttccgccaacgaacgccgcgcagac
gaagcgtcccgcgacgtcgaagcctggctcaagtgctacttcatgcgcgacaagctcggc
gaggagtacggcggcacggtcagcgccgtcacgtcgttcggcatcttcgtgcaactcgac
gatctctttatcgaaggcctcgtgcacgtcacggaactgggcagcgattatttccagttc
gacgaagtccgccacgaactgcgcggcgaacgcaccggtatccgctatcgactcaccgac
cgcgtgcgcgtgcaagtcagtcgcgtggatctggacgcccgcaagatcgacttccgcctc
gtgcgcgaaccgaacgcccgctcgctcgcgaagacgtccggccgcagcgaacgcggcggt
gccccggtgccgacgcccgccgccggcacgcccggcatcgcaggctccgccagcgccggc
ccgaccatccgtcaactgcccaagggcggcgcactgctcaacggcgtgcagcccgcaccg
gccggcaagcggcccgccaagcccaagtccgcgaaggtgaaagccgcgcgtgccgagcgc
ggcgcagcccccgcgaagcacagcggtagcggcaaggcaccggcaaagcgacagggtgga
caaggtggtcagggcggtcagggcggccccggtggtcagacgaagaagccgcgtcgctaa
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