Pandoraea commovens: NTU39_11590
Help
Entry
NTU39_11590 CDS
T08365
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pcom
Pandoraea commovens
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcom03019
]
NTU39_11590 (hrpA)
Enzymes [BR:
pcom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NTU39_11590 (hrpA)
Messenger RNA biogenesis [BR:
pcom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NTU39_11590 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
DEAD
HA2_C
AAA_19
AAA_22
NACHT
nSTAND3
T2SSE
AAA_30
AAA_16
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
UVA82103
LinkDB
All DBs
Position
2480613..2484515
Genome browser
AA seq
1300 aa
AA seq
DB search
MPEIQFPEALPVSGRREEIARAIAGHQVVIVSGETGSGKTTQLPKICLELGRGLGAGGTG
LIGHTQPRRIAASATARRIADELNSPLGEIVGFKVRFNDTLSNGASVKLMTDGILLAETQ
TDPLLRAYDTLIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFARHFGT
GEGETLRPAPVIEVSGRLYPVEVRYRPIQDDVRIANAEGRDGSRASARDRERDLMDGIVD
AVDELCREGSGDVLVFLPGEREIREAAESLRKHHPPHTEILPLFARLSATDQERVFKPSN
ARRIVLATNVAETSLTVPGIRYVVDAGTARVKRYSYRNKVEQLQIESISQAAANQRAGRC
GRVADGICIRLYDETDFQSRARFTDPEILRSSLAAVILRMQSLRLAKVEEFPFIEPPPGR
AIADGYQLLNELGAVDDTNQLTPLGRELARLPLDPRVGRMILAARDQQSLREVLIIASGL
AVQDPRDRPIEAQDAADNAHKKFADEKSEFLSWIKIWKWFEEAIAHKKSNRLLAQACREN
FLSQLRLREWRDVHSQLLTVVREQGWRLNESEATYEQVHLALLAGLLGNIGCKADDDPHF
LGAHGIKFHIWPGSSLVKKAGRWVMAGELVETSRLYARCIARIEPEWIERVGKHLVKTSL
SDAHWEKKPAQVTAYERGTLYGLTIYARRRMNFGPRDPRRAREIFLRSALVEGEWETKLP
FFAHNRKLIADIEQLEHKSRRQDVLVDDELIYAFYDAHVPADLYDGASFEHWYRETAKGS
PKLLYLVRDDLMRHEAAGVTTDLFPKKTVIAGVEMALTYHFEPGSPRDGVTLAVPLYALN
QVDARRCEWLVPGMLKEKAHLLMKSLPQKLRRHFVPLPEYAAGFLDRATFGQGALLDALM
ADARELTGVMLKSSDFKLEVLPAHLSMNFKVIDEHGRQLGMGRNLAQLRAELGQQAQRTF
QQIAAKSGATPTGNVAAEPQAGGVSKGGQASEGGKAGKGGGKSPVPGAAPAAAVEPGRYD
NLTTWSFGELPEMLEIRRGGQTLFGYPALVDRGDHCDLEVFDDPDEAQRQHRAGLRRLFA
IQLREQVKYLEKNIPGLQQMAMQYMGLGTQEELRDQIVDLSLERACLQLPWPGDNASFVA
RKDEGRGRLTLLAQEIARLAGQILTEYAALQKKLTQAKPFAQAHADMTAQLQRLIGKRFL
IDTPYAQLAHFPRYLKAMAGRIDKLKADQTRDARAMSELGPLLQNWQRATSQRRDSHDAR
LDEFRWLLEELRVSLFAQELRTPMPVSVKRLHKVWEALQR
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagatccagttccccgaagcgctgccggtctccggccgacgcgaggagatcgcg
cgcgccattgccggccatcaggtcgtgatcgtcagcggggaaaccggctcggggaaaacg
acccagttgcccaagatctgcctcgaactcgggcgtggtctgggcgcaggcggcaccggt
ctcatcggccacacccagccgcgacggattgccgcatcggccaccgcgcgtcgcattgct
gacgaactgaactcaccgctgggcgaaatcgtcggcttcaaggtccggttcaacgacacg
ctctccaacggcgcgtccgtcaaattgatgacggacgggattctgctcgccgagacgcag
accgacccgctgttgcgtgcgtacgacaccctcatcatcgacgaggcgcacgaacgcagt
ctgaacatcgactttctgcttggctacctcaagcaactgctgccgcgtcgcccggatctg
aaggtcatcatcacctcggcgaccatcgacgccgaccgcttcgcccgccacttcggcaca
ggcgagggcgagacgctgcgtcccgcaccggtcatcgaagtgagtggccgtctgtacccg
gtggaggtgcgttaccgcccgattcaggacgatgtgcgcattgcgaatgccgaaggccgt
gacggcagccgcgccagcgcacgcgaccgtgagcgcgatctgatggacggcatcgtcgac
gcggtcgacgagctttgccgcgaaggctccggcgacgtgctcgtcttcctgcccggcgag
cgcgagattcgcgaagcggccgagtcgctgcgcaagcaccatccgccgcacaccgagatt
ctgccgctgttcgcgcgcctgtctgcgaccgatcaggagcgtgtgttcaagccgtccaac
gcgcgacgcatcgtgctcgcgaccaacgttgcggaaacgtcgctgaccgtgcccggcatc
cgctatgtggtcgatgccggtacggcgcgtgtgaagcgctactcgtaccgaaacaaggtc
gagcaactgcagatcgagtcgatctcgcaggcggcggccaaccagcgagcagggcgatgc
ggtcgtgtcgccgacggcatttgcatccgtctctatgacgaaaccgacttccagtcccgc
gcacgcttcaccgacccggaaattctgcgctcgtcgctggcggcggtcattctgcgcatg
cagtcgctgcgactggccaaggtcgaggaattcccgttcatcgaaccgccgccgggacgc
gccatcgccgacggctaccaactgctgaacgaactgggcgcggtcgacgacaccaaccag
ttgacgccgcttgggcgcgaactggcgcgcctgccgctcgacccgcgcgtggggcgcatg
atccttgccgcgcgcgaccagcagtcgctgcgcgaggtgctgatcatcgccagcggtctg
gcggtgcaggacccgcgagaccggcccatcgaagcacaggacgccgccgacaacgcgcac
aagaagttcgccgacgaaaagtccgagttcctgtcgtggatcaagatatggaagtggttc
gaagaggcgattgcgcacaagaagtccaaccggctgctggcgcaagcctgtcgggaaaac
ttcctgtcgcagttgcgtctgcgcgaatggcgcgacgtccatagccagttgctcactgtg
gtgcgcgagcagggctggcgtctgaacgaatcggaagcgacttatgagcaggtgcatctg
gcgctgctcgcgggtctgctcggcaacattggctgcaaggccgacgacgatccgcatttc
ctcggcgcgcacggcatcaagttccacatctggccgggctcgtcgctggtaaagaaggct
ggacgctgggtgatggcaggcgaactggtggagacgagtcgtctctacgcgcgttgcatt
gcccgcatcgagcccgagtggatcgagcgtgtgggcaagcatctggtgaagacatcgctg
tccgacgcgcattgggagaagaagcccgcgcaggtcaccgcttacgagcgcggcacgttg
tacggcctgacgatttacgcgcggcgacgcatgaacttcggtccgcgcgatccgcgtcgc
gcgcgggaaatcttcctgcgaagcgcgctggtggaaggcgaatgggagacgaaactcccg
ttcttcgcccacaaccgcaagctcattgcggatatcgagcagctcgaacataagtcgcgc
cgtcaggacgtgctcgtcgacgacgaactgatctacgcgttctacgacgctcacgtgccc
gccgatttgtacgacggcgcgagtttcgaacattggtatcgggagacggctaaaggctcg
cccaagctgctttacctcgtgcgcgacgatctcatgcgtcacgaggcggcgggcgtcacc
accgacctgttcccgaagaagacggtcatcgcgggcgtcgaaatggcgctcacgtaccac
ttcgagcccggctcaccgcgcgacggcgtgacgctcgctgtgccgctctatgcgctcaat
caggtcgacgcacgccgctgcgagtggctcgtgcccggcatgctcaaggagaaggcgcat
ctgctgatgaagtcgctgccgcagaagttgcgtcgccacttcgtaccgctgccggaatac
gcggcgggcttcctcgaccgtgcgacgttcggtcagggcgcgctgctcgatgcgctgatg
gccgacgcgcgcgagctgaccggcgtcatgctcaagtcgagcgacttcaagctcgaagtg
ctcccggcgcacttgtcgatgaacttcaaggtcatcgacgaacacggccgtcaactcggc
atggggcgcaatctggcgcaactgcgggccgaactcggccagcaggcgcaacgcacgttc
cagcaaatcgcagccaagagcggcgcgacgcccacgggcaacgtggccgccgagccgcaa
gcgggcggcgtgtcgaagggtgggcaggcttccgaagggggcaaggcaggcaagggcggt
ggcaagtcgccggtgcccggtgctgcaccggccgccgccgtcgaacccggccgctacgac
aacctcacgacctggagctttggcgagttgccggagatgctggaaattcgtcggggcggg
cagacgctgttcggctacccggcgctggtcgaccgaggggatcattgcgatctcgaagtg
ttcgacgatccggacgaggcgcagcgccagcatcgcgccgggctgcgacgtctcttcgcc
attcagttgcgcgagcaggtgaagtatctcgagaagaacatccccggcttgcagcagatg
gcgatgcagtacatgggactggggacgcaggaagaactgcgcgaccagatcgtcgatctg
tcgctggagcgggcctgcctgcaactgccgtggccgggcgataacgcgtcgttcgttgcg
cgcaaggatgaagggcggggccgtctgacgttgctcgcgcaggaaattgcccggctcgcc
ggacagatcctcaccgagtacgccgcgcttcagaagaagctgacgcaggccaagccgttc
gcgcaggcgcacgccgacatgacggcgcaattgcaacgtctgatcggcaagcgttttctc
atcgacacgccgtatgcacagttggcgcacttcccgcgttatctgaaggcgatggcgggg
cgcatcgacaagctcaaggccgatcagacgcgcgacgcccgcgccatgagcgaactcggg
ccactgcttcagaactggcaacgggcgacgtcgcaacgccgtgactcgcacgacgcgcgg
ctcgacgagttccgctggctgctcgaagagctgcgggtgtcgctcttcgcgcaggagttg
cgcacgcccatgccggtgtcggtcaaacgtctgcacaaggtctgggaagcgttacagcgc
tga
DBGET
integrated database retrieval system
