Pandoraea commovens: NTU39_17600
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Entry
NTU39_17600 CDS
T08365
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03030
DNA replication
pcom03410
Base excision repair
pcom03420
Nucleotide excision repair
pcom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NTU39_17600 (polA)
03410 Base excision repair
NTU39_17600 (polA)
03420 Nucleotide excision repair
NTU39_17600 (polA)
03440 Homologous recombination
NTU39_17600 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcom03032
]
NTU39_17600 (polA)
03400 DNA repair and recombination proteins [BR:
pcom03400
]
NTU39_17600 (polA)
Enzymes [BR:
pcom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NTU39_17600 (polA)
DNA replication proteins [BR:
pcom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NTU39_17600 (polA)
DNA repair and recombination proteins [BR:
pcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NTU39_17600 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NTU39_17600 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
UVA77895
LinkDB
All DBs
Position
complement(3887365..3890103)
Genome browser
AA seq
912 aa
AA seq
DB search
MSEQQSLEGKTLLLVDGSSYLYRAYHALPDLRGPSGEPTGALHGIVNMLRRMRKDVHAEY
SACVFDAKGKTFRDDWYPEYKANRPSMPEDLRAQIEPIHEAVRAMGWPLLMIDGVEADDV
IGTLAKRAAELGMRVVVSTGDKDLAQLVNDRVTLVNTMTNETLDAAAVEAKFGVPPARIV
DYLALVGDTVDNVPGVEKCGPKTAVKWLTQYGDLDNLVANAAEVKGAVGENLRRALDWLP
MGRKLVTVALDCDLTPQVTSIEASLQTQPEDAEVLRDFFSRHGFKTLLREAEATVASQAG
EEAPAPVADTIEREYEAVLTWERFDAWLKIIEAAELTAFDTETTSLDAMQAQLVGLSFSC
EPGRAAYIPVAHRAPGEVEQLPRDEVLARLKHWLESPDHKKVGQNLKYDAHVLENYGVIL
GGIVHDTLLESYVLESHRSHDMDSLASRHLGVTTVKYEDVCGKGAKQIGFDDVSVERATE
YAAEDADITLRLHRALYPDVAREATLEFVYRDIELPTARVLQRMERNGVLVDTARLAAQS
DEIGRKLITLETEAYALAGQQFNLNSPKQIGDIFFTQLQLPVVKKTASGAPSTDEEVLQK
LAEDYPLPKVLLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTNYAQAVAITGRLASNDPNL
QNIPVRTAEGRRIREAFIAPPGSQLVSADYSQIELRIMAHISGDESLLRAFANGEDIHRA
TAAEIFAVTPLEVSSEQRRYAKVINFGLIYGMSAFGLAANLGIERDAAKQYIDRYFMRYP
GVARYMDETRKSAKAKGYVETVFGRRLWLPDINGGNGPRRQGAERAAINAPMQGTAADLI
KLSMIAVQRWLDDSGLQTRQIMQVHDELVLEVPDHELAEVRKRLPELMCGVAKLRVPLIA
EVGVGENWEQAH
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacagcaaagtctggaaggtaagacgctcttattggtcgatggttcgagttat
ctgtatcgagcctatcacgccctgccggatctgcgcggcccaagcggcgaacctacgggc
gcgctgcacggcatcgtcaatatgctgcgccgcatgcgtaaagacgttcatgcagagtac
agcgcttgcgttttcgatgcaaagggcaagacttttcgcgacgactggtatcccgagtac
aaggcgaatcgcccgtcgatgcccgaagacctgcgcgcgcagatcgaaccgattcacgaa
gccgtgcgcgcgatgggctggccgctgttgatgatcgacggcgtggaagccgacgacgtc
atcggcacgctcgcaaagcgggcggccgagctgggtatgcgcgtggtcgtctcgaccggc
gacaaggatctggcgcaactcgtgaacgatcgcgtcacgctcgtcaacacgatgacgaat
gaaacgctcgacgcggctgccgtcgaagccaagttcggcgtgccgcctgcgcgcatcgtc
gactacctcgcgctggtgggcgacacggtcgataacgtgccgggtgtggagaagtgcggg
ccgaagacggccgtcaagtggctcacgcaatacggcgatctcgacaacctcgtcgccaac
gccgccgaagtgaaaggtgccgtcggcgagaatctgcgacgtgcactcgactggctgccg
atggggcgcaagctcgtgacggtggcgctcgattgcgatctcacgccgcaggtcacctcc
atcgaagcgagtctgcaaacgcagcccgaagacgccgaagtgctgcgcgatttcttctcg
cgccacggcttcaagacgctgctgcgcgaagcggaagcgacggtggcatcgcaagccggt
gaggaagctccggcaccggtggccgacaccatcgaacgcgagtacgaagcagtgctcacg
tgggagcggttcgatgcgtggctgaagatcatcgaagccgccgagttgacggcgttcgat
accgagacgacgtcgctcgacgcgatgcaggcgcaactcgtcggtctgtcgttctcctgc
gaaccgggtcgcgcagcgtacataccggtggcgcaccgtgcgccaggggaagtcgagcaa
ttgccgcgcgacgaagtgctcgcccgtttgaagcactggctcgagagtcccgatcacaag
aaggtcgggcagaacctcaagtacgacgcacatgtgcttgaaaactacggcgtgattctg
ggcggcatcgtgcacgacacgctgctcgaatcgtacgtgctcgaatcgcatcgcagtcac
gacatggacagtctcgcctcgcgccatctgggcgtgacgacggtcaagtacgaagacgtg
tgcggcaagggtgccaagcagatcggcttcgacgacgtgagcgtcgaacgtgcgacggag
tacgctgcagaggacgccgacattacgctgcgtctgcatcgtgcgctgtaccccgatgtc
gcccgcgaagccacgctcgaattcgtctatcgcgatatcgaattgcccacggcgcgcgtg
cttcagcgcatggagcgcaacggtgtgctggtcgacacggcacgtctggcggcacaaagc
gacgagatcgggcgcaagctgatcacgctcgaaaccgaggcgtacgcgctggccgggcag
caattcaatctgaattcccccaagcagatcggcgacatcttcttcacgcaactgcaactg
ccggtcgtcaagaagacggccagtggtgcgccgtcgaccgatgaagaagtgttgcagaag
ctcgcagaggactatccgctgccgaaggtgctgctggagtatcgcggtctggccaagctc
aagtcgacgtacacggacaagctgccgaagatggtcaatccgtcgacgggacgtgtgcat
acgaactacgcacaggccgtggcgatcactggccgtctggcgtcgaacgatccgaacttg
cagaacattccggtgcgcacggccgaggggcgtcgcattcgcgaggccttcatcgcgccg
ccggggagtcaactggtctcggccgactactcgcagatcgagctgcgcatcatggcgcat
atctccggcgacgaaagcctgctgcgtgcgtttgcgaacggcgaggatattcaccgtgcg
accgctgcggaaatcttcgccgtcacgccgctggaggtgtcttccgagcaacgtcgctat
gccaaggtcatcaacttcggtctgatctacggcatgagcgcgttcgggctggctgcgaac
ctcggcatcgagcgcgacgcggccaagcaatacatcgatcgctacttcatgcgctatccg
ggcgtggcgcgttacatggacgagacgcgcaagagcgccaaggcgaaggggtacgttgag
accgtgttcggtcgtcgtctgtggttgccggacatcaatggcggcaacggcccgcgtcgt
caaggtgccgaacgcgcggctatcaatgcgccgatgcaaggcaccgccgccgacctcatc
aagctatctatgattgccgtgcagcgctggctggacgatagcggtttgcagacgcgtcag
atcatgcaggtgcacgacgaactcgtactcgaagtgccggatcatgaattggctgaggtt
cgcaagcgtcttccggaactgatgtgcggcgtggccaagctgcgtgtgccgttgatcgcc
gaagtcggcgttggtgaaaactgggagcaagcacactga
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