Pandoraea commovens: NTU39_18860
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Entry
NTU39_18860 CDS
T08365
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pcom
Pandoraea commovens
Pathway
pcom00260
Glycine, serine and threonine metabolism
pcom00460
Cyanoamino acid metabolism
pcom00630
Glyoxylate and dicarboxylate metabolism
pcom00670
One carbon pool by folate
pcom00680
Methane metabolism
pcom01100
Metabolic pathways
pcom01110
Biosynthesis of secondary metabolites
pcom01120
Microbial metabolism in diverse environments
pcom01200
Carbon metabolism
pcom01230
Biosynthesis of amino acids
pcom01240
Biosynthesis of cofactors
pcom04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
NTU39_18860
09102 Energy metabolism
00680 Methane metabolism
NTU39_18860
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
NTU39_18860
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
NTU39_18860
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
NTU39_18860
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
NTU39_18860
Enzymes [BR:
pcom01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
NTU39_18860
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
Beta-prop_WDR5
Motif
Other DBs
NCBI-ProteinID:
UVA78126
UniProt:
A0A5E4YAH8
LinkDB
All DBs
Position
complement(4192477..4193724)
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AA seq
415 aa
AA seq
DB search
MFDKSKSTVASVDPDVWAAIQKENQRQEDHIELIASENYTSPAVMEAQGSQLTNKYAEGY
PGKRYYGGCEYVDVVEQLAIDRVKALFGAEAANVQPNSGSQANQGVYFAMLKPGDTIMGM
SLAHGGHLTHGSPVNMSGKWFNVVSYGLNEAEDIDYDAAEKLAQQHKPKMIVAGASAFAL
KIDFERMAKIAKSVGAYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVI
LMKAEFEKSINSAIFPGIQGGPLMHVIAGKAVAFKEAASPEFKEYQQQVAKNARVMAETL
VKRGLRIVSGRTESHVMLVDLRAKNITGKAAEAALGEAHITVNKNAIPNDPEKPFVTSGV
RLGSPAMTTRGFKEAEAEKVGNLIADVLDNPEDAENLARVRAQVAELTKRFPVYG
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaaatcgaaatctaccgttgcctccgtcgatcccgacgtctgggcagcgatt
cagaaagaaaaccagcgtcaggaagatcacatcgaactgatcgcgtcggaaaactacacc
agcccggccgtgatggaagcgcagggttcgcagctgaccaacaagtatgcggaaggttat
ccgggcaagcgctattacggcggttgcgagtatgtcgacgtcgtcgaacaactggcgatc
gaccgtgtgaaggcactgttcggcgcagaagccgccaacgtgcagccgaactcgggctcg
caggctaaccagggcgtgtacttcgccatgctcaagccgggcgacacgatcatgggcatg
agcctcgcgcacggcggtcacctcacgcacggttcgccggtcaacatgtcgggcaagtgg
ttcaacgtcgtgagctacggcctgaacgaagccgaagacatcgattacgacgccgccgag
aagctggcgcaacaacacaagccgaagatgatcgtggcaggcgcctcggccttcgcgctg
aagatcgatttcgagcgcatggccaagatcgccaagtcggtcggcgcttatttcatggtc
gacatggcgcactacgccggtctgatcgccgcgggtgtgtacccgaacccggtgccgcac
gccgacttcgtcaccacgaccacgcacaagagcctgcgcggcccgcgcggtggcgtgatc
ctcatgaaggcggagttcgagaagtcgatcaactcggccatcttcccgggcattcagggt
ggtccgctcatgcacgtgatcgccggtaaggccgtcgcgttcaaggaagccgcatcgccg
gaattcaaggaataccaacagcaagtcgcgaagaacgcacgcgtgatggccgagacgctg
gtcaagcgcggtctgcgtatcgtgtcgggccgtaccgaatcgcacgtgatgctggtcgac
ctgcgcgccaagaacatcacaggtaaggctgccgaagccgcgctgggcgaagcgcacatc
accgtcaacaagaacgcgattccgaacgatccggaaaagccgttcgtgacgagcggtgtc
cgtctgggctcgccggcgatgaccacgcgtggtttcaaggaagccgaagcagaaaaggtc
ggcaacctgatcgccgacgtgctggacaacccggaagacgctgaaaacctggcccgcgtg
cgcgcacaagtggctgagttgaccaagcgtttcccggtctacggctaa
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