Pandoraea commovens: NTU39_20105
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Entry
NTU39_20105 CDS
T08365
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pcom
Pandoraea commovens
Pathway
pcom03030
DNA replication
pcom03430
Mismatch repair
pcom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NTU39_20105
03430 Mismatch repair
NTU39_20105
03440 Homologous recombination
NTU39_20105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcom03032
]
NTU39_20105
03400 DNA repair and recombination proteins [BR:
pcom03400
]
NTU39_20105
Enzymes [BR:
pcom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NTU39_20105
DNA replication proteins [BR:
pcom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NTU39_20105
DNA repair and recombination proteins [BR:
pcom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NTU39_20105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
UVA78350
UniProt:
A0ABY5QCX8
LinkDB
All DBs
Position
4465856..4467481
Genome browser
AA seq
541 aa
AA seq
DB search
MFENVVEDANAVFIPPEGIDPDALARSLPAPMVFVDLETTGGNALEDRITEIGVVEVGPH
GIEQWSTLLDPAEPIPPFIQKLTGITNEMVRGQPSFDTLAQGLAERLHGKLFVAHNARFD
YGFLKNEFRRAGIGFQADVLCTVRLSRLLFPSAARHGLDALIARFGLAPQGRHRALADAD
LLWQFWQKLHTLYTPDLIGQAVQRVTKRSSQPPQLPDEAIDALPASPGVYLFYGEGDTLL
YVGKSVDVRARVRSHFSSDHQVAKDLRISQEIRRVEVRRTVGELGALLLESQLVKQLQPV
HNRMLRRSASLYSWQLTQESDTPQLVSAKTVDFSGAESLYGTFSSRNGAESALRALADEH
RLCCAQLGLEKVAKGRPCFGYQVKRCDGVCVGDAPLSDHTARTREALATLRLETWPYDGP
IAIEEHGDNNVEYHVIDRWQYLGSVASRDALDALVDNMPAATGFDPDIYRLLGRRLAASR
DAESTAPAALTVLHLTRPAFRLSHVEQPDAAPQKPRSVALLRRRQPRPEDPDQLRLPFDV
R
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgagaacgtggtcgaagacgccaatgccgtgttcatcccgcctgaagggatcgat
ccggacgcgctcgcccgttcgctgcccgcaccgatggtcttcgtcgatctggagacgacc
gggggcaatgcgcttgaggatcgcatcaccgaaatcggcgtggtcgaagtcggcccccac
ggcatcgaacagtggagcacgctactcgatcctgccgagccgatcccgcccttcattcag
aagctgacgggcatcaccaacgagatggtgcgcgggcagccctcgttcgacacgctcgcg
caagggcttgccgagcgtctgcacggcaagctgttcgtcgcccacaacgcccgcttcgat
tacggctttctcaagaacgaattccgccgcgcaggtatcggttttcaggcggatgtcctg
tgtacggtgcgtctgtcgcgcttgctgtttccgtcggccgcacggcacgggctagacgcg
ctgatcgcgcgcttcggcctcgcaccgcaaggccgtcaccgcgctctggccgacgccgac
ctgctctggcagttctggcaaaaactccacacgctctatacgcccgacctgatcggacaa
gcggtgcaacgcgtgacgaagcggtcgagccagccgccgcaattgccggacgaagccatc
gacgcgctgcccgccagtcctggcgtctatctcttctatggcgaaggcgacacgctgtta
tacgtcggcaagagcgtagacgtccgtgcgcgcgtgcgttcgcacttctccagcgatcat
caggtcgccaaggatctgcgcatctcgcaggaaatccggcgcgtcgaagtgcggcgcacg
gtcggagaactcggtgcgctgttgcttgaatcgcagttggtcaaacagttgcaaccggtg
cacaaccggatgctgcgccgctccgcaagtctttacagttggcagttgacgcaggaaagc
gacacaccgcagctcgtgagcgcaaagacggtggacttttccggtgccgaatcgctgtac
ggcacgttctcgtcgcgcaacggtgcagagagcgcattgcgtgcgctggccgacgaacat
cgtctgtgctgcgcacaactggggttggagaaggtcgcgaaggggcgtccttgcttcggc
tatcaggtcaaacgttgcgacggcgtgtgcgtgggcgacgcgccgctgtcagaccacaca
gcgcgcacacgcgaagctctcgcgacgctgcgactcgaaacgtggccctacgacggccct
atcgccatcgaagagcatggcgacaacaacgtcgagtatcacgtcatcgaccggtggcag
tatctgggcagcgttgcgtcgcgcgatgcattggacgcgctggtcgacaacatgcctgcc
gcgaccggcttcgaccccgacatctaccgcttgctgggtcgacgtctcgctgcctcacgg
gatgcagaatccacggcccccgccgcattgacggtgctgcacctcacccgacctgcgttt
cgtcttagccacgtcgagcaacccgacgccgcgccccagaaaccgcgaagtgtggcgctt
ttgcgtcgccgtcagccgcgtcctgaagatcccgaccagcttcggctgccgttcgacgtc
cggtag
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